Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0135
(781 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0246 + 15789635-15794227,15794314-15794555,15794630-157947... 35 0.063
03_01_0646 + 4742398-4742994,4743681-4744085 32 0.59
02_01_0782 + 5827364-5827441,5827733-5827787,5828761-5828849,582... 31 0.78
07_03_1078 - 23789205-23790608,23791155-23791529,23791703-23791792 31 1.4
03_03_0221 - 15557222-15557431,15557665-15557844 31 1.4
12_02_1207 + 26995852-26996568 29 4.1
09_04_0382 + 17135554-17136468,17136762-17136833,17137675-171377... 29 4.1
03_01_0342 - 2695323-2697007,2697134-2697248,2697369-2697524 29 4.1
11_04_0341 - 16565757-16566418,16566668-16567799,16567965-16568549 29 5.5
06_03_1146 - 28004896-28005554,28005664-28005844 29 5.5
05_04_0172 + 18718661-18718930,18719410-18720252,18720326-187203... 29 5.5
10_08_0276 + 16431141-16431837,16432062-16432175,16432887-16433521 28 7.2
04_04_0114 + 22861300-22861476,22864952-22864969,22865187-22867163 28 7.2
12_02_1162 + 26612571-26613986,26614095-26614142 28 9.6
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 28 9.6
01_06_0022 + 25675400-25676146 28 9.6
>03_03_0246 + 15789635-15794227,15794314-15794555,15794630-15794771,
15796089-15796272,15796349-15796696,15796753-15797450,
15798208-15798900
Length = 2299
Score = 35.1 bits (77), Expect = 0.063
Identities = 31/89 (34%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
Frame = +1
Query: 196 SGTKKRG-VPTGHGREVYGQFTSLKTSPQTQFESHSRPDLRSPQQLEREIIRQRGLVEGR 372
SG K G VP G GR+ YG T HS D R Q+ R IR R R
Sbjct: 1321 SGPKAPGAVPGGRGRK-YGYAVKESNIRSTSSVDHSNKDSRGLQRRSRRNIR-RTEFRVR 1378
Query: 373 RAASHPHLLDEPQSRPEAS-TPYSHDRSR 456
H+ DE S E + PYS+ +R
Sbjct: 1379 ENVEKNHIQDESFSHSEQNEKPYSNGTAR 1407
>03_01_0646 + 4742398-4742994,4743681-4744085
Length = 333
Score = 31.9 bits (69), Expect = 0.59
Identities = 20/58 (34%), Positives = 25/58 (43%)
Frame = +3
Query: 513 ERESDDGGFRARLAAQGRSSFEDRIRTSGRSIESQRIHENVYRRTPDSHNRRTPDSVG 686
+R DDGG AQ S D +R R+ E QR H + R R TP + G
Sbjct: 170 DRAGDDGGGEGD--AQATKSTMDGVRRLRRAKEKQRCHRFLIHRIRAEVERATPSAAG 225
>02_01_0782 +
5827364-5827441,5827733-5827787,5828761-5828849,
5829167-5829191,5829645-5829683,5830316-5830433,
5830857-5831023,5831155-5831518,5831589-5831701,
5832185-5832310,5832436-5833339,5833694-5834036
Length = 806
Score = 31.5 bits (68), Expect = 0.78
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Frame = +3
Query: 516 RESDDGGFRARLAAQGRSSFEDRIRTSG---RSIESQR-IHENVYRRTPDSHNRRTPDSV 683
R+ GG R+R + RS ++R+ G RS+ R + + R P HNR S+
Sbjct: 711 RDRGRGGGRSRSPVRSRSPAGGKLRSHGDRSRSMSRSRSLSGSRSRSPPPIHNRSPLASL 770
Query: 684 GPKRE 698
PKRE
Sbjct: 771 SPKRE 775
>07_03_1078 - 23789205-23790608,23791155-23791529,23791703-23791792
Length = 622
Score = 30.7 bits (66), Expect = 1.4
Identities = 21/94 (22%), Positives = 41/94 (43%)
Frame = +1
Query: 373 RAASHPHLLDEPQSRPEASTPYSHDRSRRNSHANLLEATEENLHRTMKENRMMEGSELD* 552
+ +S P E + P + + ++ EA + + + N+++ GS+
Sbjct: 396 KKSSRPWYSFEAKEIKTGEAPIEDGKQETSEVIDICEAKKSD--NSACTNKVISGSKKCQ 453
Query: 553 LHKGGQVSKIESGRVVDL*NLSEYTKMYTEERLT 654
LH G + + S RV+DL E K T ++L+
Sbjct: 454 LHNGCKAEEFVSSRVIDLLQNEEKVKSMTVDKLS 487
>03_03_0221 - 15557222-15557431,15557665-15557844
Length = 129
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -3
Query: 200 PEVRTAGIGRRNQAPEVGVDGATPTSPAIWLGGSVA 93
PE R+ G+G Q V DG +PAIW G + A
Sbjct: 13 PERRSEGVGLERQWSAVAHDGGGGGTPAIWGGRTAA 48
>12_02_1207 + 26995852-26996568
Length = 238
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/47 (31%), Positives = 19/47 (40%)
Frame = -3
Query: 215 PRFFVPEVRTAGIGRRNQAPEVGVDGATPTSPAIWLGGSVASFVGRF 75
P F P A G R + P GVD P + + G S G+F
Sbjct: 135 PMSFQPTSNAARCGARRRGPSCGVDITAQCLPELKVAGGCDSACGKF 181
>09_04_0382 +
17135554-17136468,17136762-17136833,17137675-17137704,
17138744-17138817,17140022-17140367
Length = 478
Score = 29.1 bits (62), Expect = 4.1
Identities = 34/120 (28%), Positives = 50/120 (41%), Gaps = 2/120 (1%)
Frame = +1
Query: 196 SGTKKRGVPTGHGREVYGQFTSLKTSPQTQFESHSR--PDLRSPQQLEREIIRQRGLVEG 369
+G R VP G + G +++T+ QF+S + DL SP E GLV G
Sbjct: 220 NGLMPRAVPVG----LPGAAVAMQTAVN-QFDSGDKGNSDLSSPT--EPMPYSFEGLVRG 272
Query: 370 RRAASHPHLLDEPQSRPEASTPYSHDRSRRNSHANLLEATEENLHRTMKENRMMEGSELD 549
RR + E + R S RSR A LE E + + + N+ +E + D
Sbjct: 273 RRNGGGVEKVVERRQRRMIKNRESAARSRARKQAYTLE-LEAEVQKLKEMNKELERKQAD 331
>03_01_0342 - 2695323-2697007,2697134-2697248,2697369-2697524
Length = 651
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +1
Query: 316 SPQQLEREIIRQRGLVEGRRAASHPHLLDEPQSRPEASTPYSHDRSR 456
SPQ + + I+Q+G + GR A P L +P+ TP D+ R
Sbjct: 50 SPQVVAPDAIKQKGHIAGR--ALEPELRSDPRVGLAERTPVPEDQGR 94
>11_04_0341 - 16565757-16566418,16566668-16567799,16567965-16568549
Length = 792
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 206 RSAVYQRDMDVRSMANSHP*KLVHKHSSNRIQDQI 310
RS QR +D+R M N H+HS NR D +
Sbjct: 327 RSPPRQRPVDLRDMINQCRAARGHRHSPNRYDDDV 361
>06_03_1146 - 28004896-28005554,28005664-28005844
Length = 279
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/44 (36%), Positives = 17/44 (38%)
Frame = -3
Query: 248 P*TSRPCPVGTPRFFVPEVRTAGIGRRNQAPEVGVDGATPTSPA 117
P TS P P P T G P G DGA T+PA
Sbjct: 200 PTTSTPSSPPAPAAMAPSPSTTPGGVAQPPPPPGTDGANATTPA 243
>05_04_0172 +
18718661-18718930,18719410-18720252,18720326-18720354,
18720439-18720529,18720625-18720779,18721552-18721662,
18722579-18722645
Length = 521
Score = 28.7 bits (61), Expect = 5.5
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +3
Query: 519 ESDDGGFRARLAAQG-RSSFEDRIRTSGRSIESQRIHENVYRRTPDSHNRRTP 674
ESD+ R G + FE +R S R++ R+ + V RRTP S TP
Sbjct: 251 ESDNANLRYSNRRMGPQEPFEGSVRFS-RTLSVGRLRDRVLRRTPFSDGLFTP 302
>10_08_0276 + 16431141-16431837,16432062-16432175,16432887-16433521
Length = 481
Score = 28.3 bits (60), Expect = 7.2
Identities = 38/143 (26%), Positives = 57/143 (39%), Gaps = 21/143 (14%)
Frame = +1
Query: 169 RRPIPAVRTSGTKKRGVPTGHGREVYGQFTSLKTS--PQTQ-FE----SHSRPDLRSPQQ 327
R+P P + + KK+ P GH E FTS+ S P TQ F+ S L P Q
Sbjct: 253 RKPSPKI-SRHQKKKTSPKGHTAEGTMNFTSIAPSQVPITQPFQVPVTQPSHIPLTQPSQ 311
Query: 328 LEREIIRQRGLVEGRRAA--SHPHLLDEPQ------SRPEASTPYSHDR------SRRNS 465
+ + Q + E SH H + +P AS + R S N
Sbjct: 312 TSQATVTQHYMGEDENFPFDSHVHNAESDDDDLRIVEQPIASDAATRSRMGKRVASATNK 371
Query: 466 HANLLEATEENLHRTMKENRMME 534
HA + TE+ R ++ +++E
Sbjct: 372 HAGTSDKTEKATQRRRQDGKVVE 394
>04_04_0114 + 22861300-22861476,22864952-22864969,22865187-22867163
Length = 723
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -3
Query: 218 TPRFFVPEVRTAGIGRRNQAPEVGVDGATPTSP 120
TP F+ E + G+ + +AP + G T T P
Sbjct: 170 TPNFYSAECQPTGVDKLKEAPSLSGQGLTITDP 202
>12_02_1162 + 26612571-26613986,26614095-26614142
Length = 487
Score = 27.9 bits (59), Expect = 9.6
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Frame = +1
Query: 91 DATEPPSQIAGDVGVAPST-PTSGAWFRRPIPAVRTSGTKKRGVPTGHGREVYGQFTSLK 267
D+ P A D V+ S TS + R P P T+ + + G G YG F+
Sbjct: 8 DSYHPRKHYAYDRQVSSSRWRTSREYIRGPGPETHTTESAQDGQDPPAGVYSYGYFSGSG 67
Query: 268 TSPQTQFESHSRPDLR 315
PQ Q H P+++
Sbjct: 68 NDPQVQ--GHFVPEIQ 81
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 27.9 bits (59), Expect = 9.6
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Frame = +1
Query: 85 TKDATEPPSQIAGDVGVAPSTPTSGA--WFRRPIPAVRTSGTKKRGVPTG 228
T D PP+ GD G AP+ P + A W + P + PTG
Sbjct: 244 TSDVAAPPAATVGDWGAAPA-PVAAAEGWDQAGAPVATEAAVVPPVAPTG 292
>01_06_0022 + 25675400-25676146
Length = 248
Score = 27.9 bits (59), Expect = 9.6
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Frame = -3
Query: 236 RPCPVGTPRFFVPEVRTAGIGRRNQAPE----VGVDGATPTSPAIWLGGS 99
RP P+G R F+ E RT+ +G + + +DG +P S +W+ GS
Sbjct: 76 RP-PLG--RLFLEEGRTSSVGSTSSSSSSTDIAELDGVSPDSYCVWVPGS 122
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,738,245
Number of Sequences: 37544
Number of extensions: 484810
Number of successful extensions: 1797
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1796
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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