Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0135
(781 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5549| Best HMM Match : PT (HMM E-Value=1.9) 36 0.028
SB_59266| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.45
SB_3737| Best HMM Match : DM (HMM E-Value=6.1e-19) 32 0.45
SB_20306| Best HMM Match : Vicilin_N (HMM E-Value=1.8) 32 0.60
SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091) 31 0.79
SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_41052| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4) 29 4.2
SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_8051| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021) 29 4.2
SB_24047| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_20788| Best HMM Match : IATP (HMM E-Value=4.8) 29 4.2
SB_26242| Best HMM Match : Pkinase_Tyr (HMM E-Value=2.8e-15) 29 5.6
SB_17868| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.7e-36) 29 5.6
SB_56398| Best HMM Match : E-MAP-115 (HMM E-Value=0.53) 29 5.6
SB_47687| Best HMM Match : SCP (HMM E-Value=1.8e-16) 29 5.6
SB_31796| Best HMM Match : SAP (HMM E-Value=3.5e-10) 29 5.6
SB_24146| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0) 28 7.4
SB_55439| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
SB_51864| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
SB_46164| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
SB_33275| Best HMM Match : PDZ (HMM E-Value=5.2e-11) 28 9.8
SB_19615| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
SB_46036| Best HMM Match : PSRT (HMM E-Value=1) 28 9.8
SB_43856| Best HMM Match : Laminin_I (HMM E-Value=0.057) 28 9.8
SB_31861| Best HMM Match : rve (HMM E-Value=3.6e-07) 28 9.8
>SB_5549| Best HMM Match : PT (HMM E-Value=1.9)
Length = 282
Score = 36.3 bits (80), Expect = 0.028
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +1
Query: 256 TSLKTSPQTQFESHSRPDLR-SPQQLEREIIRQRGLVEGRRAASHPHLLDEPQSRPEAST 432
TS KTSP+ ++ + + SP+Q R++ RQ G GR+ P D P+ +PE
Sbjct: 83 TSPKTSPKISLKTSLKKSPKISPKQARRQVERQAGRQAGRQVRRLPE--DRPEEKPE-DR 139
Query: 433 PYSHDRSR 456
P H +
Sbjct: 140 PEDHPEDK 147
>SB_59266| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 678
Score = 32.3 bits (70), Expect = 0.45
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +3
Query: 606 IESQRIHENVYRRTPDS-HNRRTPDSVGP-KREDTLTTGQAANDENASQKSADS 761
I+ I + + RRT DS H TP S P KR+ + T A ENAS+ +S
Sbjct: 264 IDDVTIQDELARRTIDSNHMVSTPKSTSPPKRDSSATQNDARMIENASRDQLES 317
>SB_3737| Best HMM Match : DM (HMM E-Value=6.1e-19)
Length = 312
Score = 32.3 bits (70), Expect = 0.45
Identities = 18/71 (25%), Positives = 31/71 (43%)
Frame = +1
Query: 301 RPDLRSPQQLEREIIRQRGLVEGRRAASHPHLLDEPQSRPEASTPYSHDRSRRNSHANLL 480
RP L P L+ + +G + P P + +++TP H ++HA L
Sbjct: 127 RPKLEKPSTLDEIVTEPSNEFKGFQVIQSPTNPPFPTEKDKSATPSIHQDQGGSNHARLD 186
Query: 481 EATEENLHRTM 513
E T + LH+ +
Sbjct: 187 ENTLQILHQQL 197
>SB_20306| Best HMM Match : Vicilin_N (HMM E-Value=1.8)
Length = 360
Score = 31.9 bits (69), Expect = 0.60
Identities = 19/78 (24%), Positives = 35/78 (44%)
Frame = +1
Query: 256 TSLKTSPQTQFESHSRPDLRSPQQLEREIIRQRGLVEGRRAASHPHLLDEPQSRPEASTP 435
+S KTSP+T ++ S+ ++ R+ R+ L + ++ L P + PE S
Sbjct: 160 SSPKTSPKTSLKTSSKTSPKTSLNTSRKTSRKTSLKRSLKTSTKTSLKTNPTTSPEISLK 219
Query: 436 YSHDRSRRNSHANLLEAT 489
SR+ S L+ +
Sbjct: 220 TRWKTSRKTSPKTSLKTS 237
Score = 28.7 bits (61), Expect = 5.6
Identities = 24/96 (25%), Positives = 42/96 (43%)
Frame = +1
Query: 256 TSLKTSPQTQFESHSRPDLRSPQQLEREIIRQRGLVEGRRAASHPHLLDEPQSRPEASTP 435
TSLKTS +T ++ + L++ + E R+ L G + ++ L ++R + S
Sbjct: 232 TSLKTSLKTSLKTSLKASLKTSLKTSLETSRKTSLKTGPKTSTKTSLETSLKTRLKTSLK 291
Query: 436 YSHDRSRRNSHANLLEATEENLHRTMKENRMMEGSE 543
S S S + LE E+ E++ E E
Sbjct: 292 TSPKTSPEISPKDKLEDKPEDRPEEKPEDKPEEKPE 327
Score = 28.3 bits (60), Expect = 7.4
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Frame = +1
Query: 256 TSLKTSPQTQFESHSRPDLRSPQQLEREIIRQRGLVEGR---RAASHPHLLDEPQSRPEA 426
TS KTSP+T E + ++ ++ R+ +R L + A P D P+ +PE
Sbjct: 7 TSQKTSPETSPEISPKTGRKTDRKTSRKTSLKRSLTTNKPEDNADEKPE--DNPEDKPED 64
Query: 427 STPYSHDRSRRNSHANLLEATEEN 498
T DR L + +EN
Sbjct: 65 KT---EDRPEDKPEDKLEDKPKEN 85
>SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091)
Length = 761
Score = 31.5 bits (68), Expect = 0.79
Identities = 29/102 (28%), Positives = 40/102 (39%), Gaps = 3/102 (2%)
Frame = +1
Query: 229 HGREVYGQFTSLKTSPQTQFESHSRPDLRS-PQQLEREIIRQRGLVEGRRAASHPHLLDE 405
H R T ++ T+ S SR RS Q+L+ +R + E R ASH
Sbjct: 433 HTRSRSRSHTRSRSRSHTRSRSRSRIRSRSRSQELDSRTLRSKKSFERRSRASHRESRSR 492
Query: 406 PQSRP--EASTPYSHDRSRRNSHANLLEATEENLHRTMKENR 525
+SR E S S RSR S + + H T +R
Sbjct: 493 SKSRTKRERSRKKSRSRSRPRSRSRSRGDSLTGFHSTSLSDR 534
>SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2848
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/49 (38%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Frame = +1
Query: 82 PTKD--ATEPPSQIAGDVGVAPSTPTSGAWFRRPIPAVRTSGTKKRGVP 222
PT D A S + V AP TPT A + P TSGT G P
Sbjct: 1001 PTTDRRAASSSSNHSTPVNSAPPTPTKNATPSKGTPGQSTSGTPVNGTP 1049
>SB_41052| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 29.5 bits (63), Expect = 3.2
Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 3/80 (3%)
Frame = +3
Query: 528 DGGFRARLAAQGRSSFEDRIRTSGRSIESQRIHENVYRRTPDSHNRRT---PDSVGPKRE 698
DG R RL + +++ S R+ E R H V P S T D P R
Sbjct: 150 DGSGRERLLRERPVPSLEKVMESLRAAEISRTHRQVISGKPYSSQAETIHHTDKRQPNRR 209
Query: 699 DTLTTGQAANDENASQKSAD 758
+ G+ N N+ Q+ +
Sbjct: 210 NNQRKGRGNNGNNSGQQKTN 229
>SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4)
Length = 428
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = +1
Query: 400 DEPQSRPEASTPYSHDRSRRNSHANLLEAT--EENLHRTMKENR 525
+EP S P S P+ H SR++ H+ ++ +E+ HR+ + +R
Sbjct: 25 EEPPSPPRPS-PHRHKHSRKHQHSKQSDSDSEDEHRHRSSRRHR 67
>SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1351
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +1
Query: 136 APSTPTSGAWFRRPIPAVRTSGTKKRGVP 222
+P+TP SG R PIP TS T P
Sbjct: 260 SPATPASGPPIRTPIPVKETSTTALESAP 288
>SB_8051| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 840
Score = 29.1 bits (62), Expect = 4.2
Identities = 24/76 (31%), Positives = 28/76 (36%), Gaps = 1/76 (1%)
Frame = +1
Query: 85 TKDATEPPSQIAGDVGVAPST-PTSGAWFRRPIPAVRTSGTKKRGVPTGHGREVYGQFTS 261
TK PS GD T P P T GTK + P+G Q T+
Sbjct: 573 TKPQPSGPSHNPGDQATTLGTKPQPSGPRHNPGDQATTLGTKPQ--PSGPSHNPRDQATT 630
Query: 262 LKTSPQTQFESHSRPD 309
L T PQ SH+ D
Sbjct: 631 LGTKPQPSGPSHNPRD 646
Score = 28.3 bits (60), Expect = 7.4
Identities = 21/68 (30%), Positives = 32/68 (47%)
Frame = +1
Query: 106 PSQIAGDVGVAPSTPTSGAWFRRPIPAVRTSGTKKRGVPTGHGREVYGQFTSLKTSPQTQ 285
P A +G+ P P+ + + P +T GTK + P+G + Q T+L T PQ
Sbjct: 338 PRDHATTLGIKPK-PSGPS--QNPRDQAKTLGTKPK--PSGPSQNPGDQATTLGTKPQPS 392
Query: 286 FESHSRPD 309
SH+ D
Sbjct: 393 GPSHNPRD 400
>SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021)
Length = 1217
Score = 29.1 bits (62), Expect = 4.2
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = +3
Query: 510 DERESDDGGFRARLAAQGRSSFEDRIRTSGRSIESQRIHENVYRRTPDSHNRRT 671
DER+ R R +G ++ D+ SGR + + VY P S +RRT
Sbjct: 1090 DERDGGAWRGRDREEPRGGDAWRDKPEESGRQARPEELKCWVYNPRPASSHRRT 1143
>SB_24047| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2905
Score = 29.1 bits (62), Expect = 4.2
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = -1
Query: 517 LSSFCEGFLQLLLEG*RESSAWICHDCMEWMLQVLIAVHLVDEDVMLPVC-LRLIL 353
L F + + + EG E++ HD M W++ VLI L+D + L +C +R I+
Sbjct: 1230 LGFFVQVLSKAIDEGMMETALDWTHDAMTWVISVLI---LIDTEFELSICAIRTIM 1282
>SB_20788| Best HMM Match : IATP (HMM E-Value=4.8)
Length = 336
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +1
Query: 196 SGTKKRGVPTGHGREVYGQFTSLKTSPQTQFESHSRPDLRSPQQ 327
S T+KR P G E+ G T + Q ++ PD++ P++
Sbjct: 207 SPTRKRHGPCDQGNEIEGATTRSEPKAQASDKNSDSPDMKRPKK 250
>SB_26242| Best HMM Match : Pkinase_Tyr (HMM E-Value=2.8e-15)
Length = 1019
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +3
Query: 108 KPDRRRCWRRPIDPNLRRL 164
+ DR R WR DPNLRRL
Sbjct: 643 RDDREREWRERRDPNLRRL 661
>SB_17868| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.7e-36)
Length = 592
Score = 28.7 bits (61), Expect = 5.6
Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 9/103 (8%)
Frame = +1
Query: 262 LKTSPQTQFESHSRPDLRSPQQLERE---IIRQRGLVEGRRAASHPHLLDE---PQSRPE 423
+KT P+ Q + R+ + + + I+R R + + RR P + DE + PE
Sbjct: 421 VKTDPRRQMSFNPAAKRRTMHKSDNQSANIVRARSMRQTRRKKD-PEIGDEGGFELAYPE 479
Query: 424 ---ASTPYSHDRSRRNSHANLLEATEENLHRTMKENRMMEGSE 543
A+ ++ ++ N H N +R+M+ENR+ EG++
Sbjct: 480 TFFANDNHNENKESDNHHLNRNNNFSLVENRSMRENRVDEGAQ 522
>SB_56398| Best HMM Match : E-MAP-115 (HMM E-Value=0.53)
Length = 502
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +3
Query: 108 KPDRRRCWRRPIDPNLRRL 164
+ DR R WR DPNLRRL
Sbjct: 371 RDDREREWRERRDPNLRRL 389
>SB_47687| Best HMM Match : SCP (HMM E-Value=1.8e-16)
Length = 600
Score = 28.7 bits (61), Expect = 5.6
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Frame = +3
Query: 504 QNDERESDDGGFRARLAAQGRSSFEDRIRTSG-RSIESQRIHENVYRRTPDSHNRRTPDS 680
+N +ES D G + QG + + T G S+E+QR+ +V N +
Sbjct: 261 KNKPKESSDKG-EEKEEKQGPNDTTGKPATGGANSVEAQRLGPSVADTQGPGPNVQETQG 319
Query: 681 VGPKREDTLTTGQAANDENASQKSADS 761
GP DT A E +AD+
Sbjct: 320 HGPSAADTQAGPNAPEMEGPGPSAADT 346
>SB_31796| Best HMM Match : SAP (HMM E-Value=3.5e-10)
Length = 1029
Score = 28.7 bits (61), Expect = 5.6
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +1
Query: 295 HSRPDLRSPQQLEREIIRQRGLVEGRRAASHPHLLDEPQSRPEASTPYSHDRS 453
H++P + S Q+ R + + +G+ A S + +P+S E P+SH RS
Sbjct: 658 HAKPKMESMQRSYSNSERSQ-VEDGKTALSGITMEAKPRSNSEPPQPFSHKRS 709
>SB_24146| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 61
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +1
Query: 265 KTSPQTQFESHSRPDLRSPQQLEREIIRQRGLVE 366
+++PQ + SH RPD+ +P + + + RG VE
Sbjct: 7 QSTPQGYWNSHQRPDVIAPPNMRGDHTQLRGGVE 40
>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
Length = 2858
Score = 28.3 bits (60), Expect = 7.4
Identities = 18/72 (25%), Positives = 34/72 (47%)
Frame = +1
Query: 478 LEATEENLHRTMKENRMMEGSELD*LHKGGQVSKIESGRVVDL*NLSEYTKMYTEERLTA 657
+ + EE+LHR +EN + G +LD L Q+++ + +S+Y +
Sbjct: 1775 IASLEEDLHRAQQENANLRG-QLDELRH--QMARAKEDLFTAQRQVSDYAAQADNAKREV 1831
Query: 658 IIVGRRIQWDQN 693
+ +IQW +N
Sbjct: 1832 VDRENQIQWHKN 1843
>SB_55439| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +1
Query: 352 RGLVEGRRAASHPHLLDEPQSRPEASTP---YSHDRSRRNSH 468
R + E + SH ++ +P + PE S P S D++R NSH
Sbjct: 204 RTVTEIQLGVSHENIEIDPLTNPEPSRPGFGLSSDKNRTNSH 245
>SB_51864| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 270
Score = 27.9 bits (59), Expect = 9.8
Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 1/102 (0%)
Frame = +1
Query: 85 TKDATEPPSQIAGDVGVAPSTPTS-GAWFRRPIPAVRTSGTKKRGVPTGHGREVYGQFTS 261
TK++ S AG VG P TPT+ A + G K V GH E+ Q S
Sbjct: 38 TKESEVVLSCNAGRVGKEPRTPTAKTAEQGARTKTLAVGGGNKPTVTQGHILELSRQVES 97
Query: 262 LKTSPQTQFESHSRPDLRSPQQLEREIIRQRGLVEGRRAASH 387
L + E P RS ++ ER ++ ++ R+ ++
Sbjct: 98 LLEENRRLEELAGSPSSRSARK-ERRAVKSDFTIKDLRSVAN 138
>SB_46164| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 784
Score = 27.9 bits (59), Expect = 9.8
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = +3
Query: 588 RTSGRSIESQRIHENVYRRTPDSHNRRTPDSVGPKREDTLTTGQAANDENASQKSAD 758
R S +++ QR E+ P + +RR+PD P+ E+ + + +ND + SA+
Sbjct: 192 RMSDMALKRQRSEED---DEPPNSDRRSPDQKRPRPENIVLSNGFSNDVHGRMFSAE 245
>SB_33275| Best HMM Match : PDZ (HMM E-Value=5.2e-11)
Length = 881
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +1
Query: 373 RAASHPHLLD-EPQSRPEASTPYSHDRS 453
RAAS P+L + P+SR S PYS D+S
Sbjct: 672 RAASEPYLDEMRPRSRSIPSAPYSVDQS 699
>SB_19615| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1376
Score = 27.9 bits (59), Expect = 9.8
Identities = 18/66 (27%), Positives = 24/66 (36%)
Frame = +1
Query: 82 PTKDATEPPSQIAGDVGVAPSTPTSGAWFRRPIPAVRTSGTKKRGVPTGHGREVYGQFTS 261
PT A PP+ V PS +G + GT K V T + YG +
Sbjct: 631 PTSAAKHPPAATKQQVHSPPSVTKTGHTISASTKTQDSKGTLKAAVKTSPATKTYGPPAT 690
Query: 262 LKTSPQ 279
TS +
Sbjct: 691 GTTSKE 696
>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
Length = 878
Score = 27.9 bits (59), Expect = 9.8
Identities = 23/92 (25%), Positives = 34/92 (36%)
Frame = +1
Query: 175 PIPAVRTSGTKKRGVPTGHGREVYGQFTSLKTSPQTQFESHSRPDLRSPQQLEREIIRQR 354
P AVR S T+ + P G + +TS + + + P+ RSP R +R
Sbjct: 519 PTQAVRPSSTQGQSAPVGRTKSPSRSYTSPR-------QRRTSPNNRSPPPRRRSPSPRR 571
Query: 355 GLVEGRRAASHPHLLDEPQSRPEASTPYSHDR 450
RR ++ P P R H R
Sbjct: 572 PSPSPRRRSTSPSRKSPPPRRVHRHQDVVHPR 603
>SB_43856| Best HMM Match : Laminin_I (HMM E-Value=0.057)
Length = 976
Score = 27.9 bits (59), Expect = 9.8
Identities = 20/96 (20%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
Frame = +1
Query: 250 QFTSLKTSPQTQFESHSRPDLRSPQQLEREIIRQRGLVEGRRAASHPHLLDEPQS-RPEA 426
Q+ S +S ++Q+E +R +L+ ++ E + + +E L E + +
Sbjct: 333 QYRSALSSAKSQYEQ-ARDELQRVKESESHLCAELESIESAHRVQVERLEREKEEFKNYK 391
Query: 427 STPYSHDRSRRNSHANLLEATEENLHRTMKENRMME 534
+ + + HA + A E+ L R K+N+ +E
Sbjct: 392 QEEVASFKEQTRQHALTIVAMEDRLLRLTKQNKQLE 427
>SB_31861| Best HMM Match : rve (HMM E-Value=3.6e-07)
Length = 1253
Score = 27.9 bits (59), Expect = 9.8
Identities = 24/90 (26%), Positives = 32/90 (35%), Gaps = 3/90 (3%)
Frame = +1
Query: 136 APSTPTSGAWFRRPIPAVRT--SGTKKRGVPTGHGREVYGQFTSLKTSPQT-QFESHSRP 306
+P PT A PI + + TK+ PT H GQ P Q + P
Sbjct: 313 SPQAPTVHATQAEPIAQISSLHGETKQDTRPTTHATT--GQAARTARPPHLLQGRMEASP 370
Query: 307 DLRSPQQLEREIIRQRGLVEGRRAASHPHL 396
SPQ + R +G HPH+
Sbjct: 371 LQGSPQVTNHNLARTKGQTSEGNRRHHPHI 400
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,186,485
Number of Sequences: 59808
Number of extensions: 522200
Number of successful extensions: 1758
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1752
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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