Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0135
         (781 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    25   0.60 
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    23   3.2  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    22   7.4  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 25.4 bits (53), Expect = 0.60
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 394 LLDEPQSRPEASTPYSHDRSRRNSHANLLEATEENL 501
           L++E +S+P    P   D S +N    ++E  E+NL
Sbjct: 47  LVEELKSKPGKLVPLQCDLSNQNDILKVIEWVEKNL 82


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +1

Query: 304 PDLRSPQQLEREIIRQRGLVEGRRAASHPHLLDEPQSRPEASTP 435
           P LR   + E E    R +   +    HP L  EP++ P  + P
Sbjct: 86  PRLRREAESEAEPGNNRPVYIPQPRPPHPRLRREPEAEPGNNRP 129


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/34 (29%), Positives = 14/34 (41%)
 Frame = -3

Query: 329 NCCGLRRSGLECDSNCVCGLVFKDVNWP*TSRPC 228
           N  G+   G++C  N   G   +      TS PC
Sbjct: 74  NYLGICAEGMQCSCNKCIGCSAEKFECSKTSNPC 107


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,188
Number of Sequences: 438
Number of extensions: 4309
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)