Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0135
(781 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g60380.1 68416.m06753 expressed protein 33 0.28
At1g44910.1 68414.m05146 FF domain-containing protein / WW domai... 31 0.86
At4g24260.1 68417.m03481 endo-1,4-beta-glucanase, putative / cel... 29 3.5
At4g03260.1 68417.m00445 leucine-rich repeat family protein cont... 29 3.5
At2g35640.1 68415.m04371 hydroxyproline-rich glycoprotein family... 29 3.5
At5g47750.1 68418.m05899 protein kinase, putative similar to pro... 29 4.6
At3g03060.1 68416.m00302 AAA-type ATPase family protein contains... 29 4.6
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 28 6.0
At5g02070.1 68418.m00128 protein kinase-related contains eukaryo... 28 6.0
At2g01100.3 68415.m00018 expressed protein 28 6.0
At2g01100.2 68415.m00017 expressed protein 28 6.0
At2g01100.1 68415.m00016 expressed protein 28 6.0
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 28 6.0
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 28 6.0
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 28 6.0
At5g03040.1 68418.m00252 calmodulin-binding family protein simil... 28 8.0
At4g03550.1 68417.m00486 glycosyl transferase family 48 protein ... 28 8.0
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 28 8.0
>At3g60380.1 68416.m06753 expressed protein
Length = 743
Score = 32.7 bits (71), Expect = 0.28
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Frame = +1
Query: 229 HGREVYGQFTSLKTSPQTQFESHSRPDLRSPQQLEREIIRQRGLVEGRRAASHPH--LLD 402
HG++V S + + + ES R R P+Q E I+ + RA S P ++
Sbjct: 611 HGKDVKTDGDSSEDRAEAKVESRGRTKSRRPRQEELSIVLHQEKSSETRAKSEPEEVAME 670
Query: 403 EPQSRPEASTPYSHD 447
EPQ+ + + +
Sbjct: 671 EPQAEQQPEVTFEEE 685
>At1g44910.1 68414.m05146 FF domain-containing protein / WW
domain-containing protein contains Pfam profiles PF01846:
FF domain, PF00397: WW domain
Length = 946
Score = 31.1 bits (67), Expect = 0.86
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +1
Query: 400 DEPQSRPEASTPYSHDRSRRNSHANLLEATEENLH-RTMKENRMMEGSE 543
D+ ++S + +DR + HAN E+ EN H R KE+ G++
Sbjct: 889 DDRDESKKSSRKHGNDRKKSRKHANSPESESENRHKRQKKESSRRSGND 937
>At4g24260.1 68417.m03481 endo-1,4-beta-glucanase, putative /
cellulase, putative similar to
endo-1,4-beta-D-glucanase; cellulase GI:5689613 from
[Brassica napus]
Length = 620
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 126 CWRRPIDPNLRRLVPTPYTSSTDLRDEEA 212
CW RP D + +R V Y+S +DL E A
Sbjct: 247 CWMRPEDIHYKRTVSQCYSSCSDLAAEMA 275
>At4g03260.1 68417.m00445 leucine-rich repeat family protein
contains leucine rich repeat (LRR) domains, Pfam:PF00560
Length = 677
Score = 29.1 bits (62), Expect = 3.5
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Frame = +1
Query: 373 RAASHPHLLDEPQSRPEASTPYS----HDRSRRNSHANLLEATEENLHRTMKENRMMEGS 540
R+ S P++ D S E S+P+ H RS + HA T++++H T +E + E
Sbjct: 207 RSNSLPNIAD---SSSEKSSPFKYSSHHSRSSDDLHALDTRQTDKSVHETDEEVKQEEDQ 263
Query: 541 ELD-*LHKGGQVSK 579
+ D +H G +K
Sbjct: 264 DRDYDMHNSGDNNK 277
>At2g35640.1 68415.m04371 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 340
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +1
Query: 103 PPSQIAGDVGVAPSTPTSGAWFRRPI-PAVRTSGTKKRGVPTG 228
PP ++ + P P S ++ PI P V TS TK+R G
Sbjct: 199 PPQSLSLSLPSPPQPPPSSSFHAEPIPPTVGTSSTKRRRTTPG 241
>At5g47750.1 68418.m05899 protein kinase, putative similar to
protein kinase G11A [Oryza sativa] SWISS-PROT:P47997
Length = 586
Score = 28.7 bits (61), Expect = 4.6
Identities = 25/94 (26%), Positives = 36/94 (38%), Gaps = 2/94 (2%)
Frame = +1
Query: 220 PTGHGREVYGQFTSLKTSPQTQFESHSRPDLRSPQQLEREIIRQR--GLVEGRRAASHPH 393
P+GHG EV Q K S ++ + P QL+R + R G+ E +R P
Sbjct: 7 PSGHGAEVEAQ----KRSSSNSSTKSAKAETFEPMQLQRSVTNPRAVGIPESKRL---PE 59
Query: 394 LLDEPQSRPEASTPYSHDRSRRNSHANLLEATEE 495
+ S P P S H + L E+
Sbjct: 60 SFRKRSSDPAVCKPDFSSLSTVLEHVDSLTIDEK 93
>At3g03060.1 68416.m00302 AAA-type ATPase family protein contains a
ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
Length = 639
Score = 28.7 bits (61), Expect = 4.6
Identities = 33/163 (20%), Positives = 63/163 (38%), Gaps = 8/163 (4%)
Frame = +1
Query: 82 PTKDATEPPSQIAGDVGVAP-----STPTSGAWFRRPIPAVRTSGTKKRGVPTGHGREVY 246
P + A+ PP +AG+ AP P + + P R + K + + ++V+
Sbjct: 42 PQQQASPPPPSLAGEESSAPPRARNDNPRTSSGGFDPEALERGAKALKEINHSSYAKKVF 101
Query: 247 GQFTSLKTSPQTQFESHSRPDLRSPQQLEREIIRQRGLV-EGRRAASHPHLLDEPQSRPE 423
+ + QT+F + ++ Q E E R + + E ++ A H +R E
Sbjct: 102 ESIKQQEETKQTEFATKAQEFKAMQAQAETE--RHKVIYDEQKKLAQHQAQTKSQMARYE 159
Query: 424 ASTPYSHDRSRRNSHANLLEATEENLHRTMKEN--RMMEGSEL 546
++ ++S E HRT + +M E S +
Sbjct: 160 DDLARKRMQACKSS-KQFFNTAENEFHRTRNQELVKMQEDSAI 201
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 28.3 bits (60), Expect = 6.0
Identities = 32/124 (25%), Positives = 49/124 (39%)
Frame = +1
Query: 304 PDLRSPQQLEREIIRQRGLVEGRRAASHPHLLDEPQSRPEASTPYSHDRSRRNSHANLLE 483
PD RS ER+ R R S D E + +SHD RRN H
Sbjct: 106 PDRRSDGNYERDRYSDRSRERDR---SQDRRKDHRYIEKERAYEHSHDFERRNDH----- 157
Query: 484 ATEENLHRTMKENRMMEGSELD*LHKGGQVSKIESGRVVDL*NLSEYTKMYTEERLTAII 663
+ + R + R+ +G E D G S +++GR ++ + E T+ + I+
Sbjct: 158 ---DMVDRNGYKERVFDGDEGD---WRGDRSYVDNGRGINGTSAHEGRSQETKREDSTIL 211
Query: 664 VGRR 675
G R
Sbjct: 212 DGGR 215
>At5g02070.1 68418.m00128 protein kinase-related contains eukaryotic
protein kinase domain, INTERPRO:IPR000719
Length = 657
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +1
Query: 430 TPYSHDRSRRNSHANLLEATEENL--HRTMKENRMMEGSEL 546
T +SH + +++ H N+++ EE L + T K +R+ G E+
Sbjct: 316 TKHSHQKVKKDIHKNIVKEREEMLSANSTGKSSRIFTGREI 356
>At2g01100.3 68415.m00018 expressed protein
Length = 247
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/65 (21%), Positives = 32/65 (49%)
Frame = +1
Query: 331 EREIIRQRGLVEGRRAASHPHLLDEPQSRPEASTPYSHDRSRRNSHANLLEATEENLHRT 510
E ++ R +G +RAAS + S + SH++ RR++H++ ++ ++
Sbjct: 42 ETKVKRSKGPKRKQRAASESSSESDSSSEVRRKSRRSHNKHRRHAHSDSDDSDRRKEKKS 101
Query: 511 MKENR 525
++ R
Sbjct: 102 RRQKR 106
>At2g01100.2 68415.m00017 expressed protein
Length = 247
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/65 (21%), Positives = 32/65 (49%)
Frame = +1
Query: 331 EREIIRQRGLVEGRRAASHPHLLDEPQSRPEASTPYSHDRSRRNSHANLLEATEENLHRT 510
E ++ R +G +RAAS + S + SH++ RR++H++ ++ ++
Sbjct: 42 ETKVKRSKGPKRKQRAASESSSESDSSSEVRRKSRRSHNKHRRHAHSDSDDSDRRKEKKS 101
Query: 511 MKENR 525
++ R
Sbjct: 102 RRQKR 106
>At2g01100.1 68415.m00016 expressed protein
Length = 247
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/65 (21%), Positives = 32/65 (49%)
Frame = +1
Query: 331 EREIIRQRGLVEGRRAASHPHLLDEPQSRPEASTPYSHDRSRRNSHANLLEATEENLHRT 510
E ++ R +G +RAAS + S + SH++ RR++H++ ++ ++
Sbjct: 42 ETKVKRSKGPKRKQRAASESSSESDSSSEVRRKSRRSHNKHRRHAHSDSDDSDRRKEKKS 101
Query: 511 MKENR 525
++ R
Sbjct: 102 RRQKR 106
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +3
Query: 543 ARLAAQGRSSFEDRIRTSGRSIESQRIHENVYRRTPDS-HNRRTP 674
+R ++GRS + R R+ GRS+ R R+P + +RR+P
Sbjct: 201 SRSPSRGRSYSKSRSRSRGRSVSRSRSRSRSRSRSPKAKSSRRSP 245
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +3
Query: 543 ARLAAQGRSSFEDRIRTSGRSIESQRIHENVYRRTPDS-HNRRTP 674
+R ++GRS + R R+ GRS+ R R+P + +RR+P
Sbjct: 201 SRSPSRGRSYSKSRSRSRGRSVSRSRSRSRSRSRSPKAKSSRRSP 245
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +3
Query: 543 ARLAAQGRSSFEDRIRTSGRSIESQRIHENVYRRTPDS-HNRRTP 674
+R ++GRS + R R+ GRS+ R R+P + +RR+P
Sbjct: 201 SRSPSRGRSYSKSRSRSRGRSVSRSRSRSRSRSRSPKAKSSRRSP 245
>At5g03040.1 68418.m00252 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 291
Score = 27.9 bits (59), Expect = 8.0
Identities = 45/176 (25%), Positives = 72/176 (40%), Gaps = 2/176 (1%)
Frame = +1
Query: 178 IPAVRTSGTKKRGVPTGHGREVYGQFTSLKTSPQTQFESH-SRPDLRSPQQLEREIIRQR 354
+P+ G +R PT + + ++ QT F + +R LR+ + L R +
Sbjct: 91 VPSSSAPGVVRRATPTRFAGKSNEEAAAILI--QTIFRGYLARRALRAMRGLVRLKLLME 148
Query: 355 GLVEGRRAASHPHLLDEPQSRPEASTPYSHDRSRRNSHANLLEATEENLHRTMKENRMME 534
G V R+AA+ + + SR + S R+RR + +EEN R K+
Sbjct: 149 GSVVKRQAANTLKCM-QTLSRVQ-----SQIRARR------IRMSEENQAR-QKQLLQKH 195
Query: 535 GSELD*LHKGGQVS-KIESGRVVDL*NLSEYTKMYTEERLTAIIVGRRIQWDQNAK 699
EL L G + I+S V+ LS+Y ER A + W N+K
Sbjct: 196 AKELAGLKNGDNWNDSIQSKEKVEANLLSKYEATMRRERALAYSYSHQQNWKNNSK 251
>At4g03550.1 68417.m00486 glycosyl transferase family 48 protein
contains Pfam profile: PF02364 1,3-beta-glucan synthase
Length = 1780
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -2
Query: 315 SKIWS*MRFELCLWTSFQGCELAIDLTSMSRWYTAL 208
S++W+ +L LW S++G LA + M +Y AL
Sbjct: 966 SELWTTKLRDLRLWASYRGQTLARTVRGMMYYYRAL 1001
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = +3
Query: 603 SIESQRIHENVYRRTPDSHNRRTPDSVGPKREDTLTTGQAANDENASQKSA 755
S E +IH + HN+R+P + T + N++ AS +SA
Sbjct: 153 SSEVHKIHNYEKKDHKHRHNKRSPSPQAQSQRKRSRTDDSRNEQRASLRSA 203
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,780,014
Number of Sequences: 28952
Number of extensions: 358014
Number of successful extensions: 1160
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1158
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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