Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0133
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    36   0.004
SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch...    26   4.5  
SPCC663.12 |cid12||poly|Schizosaccharomyces pombe|chr 3|||Manual       25   7.8  

>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 36.3 bits (80), Expect = 0.004
 Identities = 19/49 (38%), Positives = 27/49 (55%)
 Frame = +3

Query: 36  HYHHTFPWDYKTAELGDYSLNLSKLFIDFMAKIDWAYDLKTVSTDVIQK 182
           +YHH FP DY+   L  Y  + +K+FI   +    AY+L T   + IQK
Sbjct: 285 NYHHAFPNDYRNG-LRWYEYDPTKIFIYIASLFGLAYNLNTFPDNEIQK 332


>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 333

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 8/37 (21%)
 Frame = +3

Query: 33  PHYHHT-----FPWDYKTAELGDYSLN---LSKLFID 119
           P YH        PW Y+  EL DY+L+   L KLF D
Sbjct: 30  PFYHEVRQMSQHPWMYEDPELQDYALSILPLDKLFQD 66


>SPCC663.12 |cid12||poly|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 336

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -2

Query: 188 RSFLNDVS*YCLKVISPIDLRHEINEQLAQIKGIISKF 75
           + +LN+V    L +  PID  ++I +Q  QI  I + F
Sbjct: 242 KGWLNEVQPNLLSIEDPIDRNNDIGKQSFQISMIKAAF 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,881,850
Number of Sequences: 5004
Number of extensions: 59285
Number of successful extensions: 136
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)