Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0133
         (696 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g11060.1 68418.m01292 homeobox protein knotted-1 like 4 (KNAT...    30   1.7  
At5g01690.1 68418.m00086 cation/hydrogen exchanger, putative (CH...    29   2.2  
At5g25220.1 68418.m02990 homeobox protein knotted-1 like 3 (KNAT...    29   2.9  
At3g49970.1 68416.m05464 phototropic-responsive protein, putativ...    28   5.1  
At4g15090.1 68417.m02318 far-red impaired response protein (FAR1...    28   6.8  
At5g50375.1 68418.m06239 cyclopropyl isomerase (CPI1)                  27   9.0  
At4g25840.1 68417.m03717 haloacid dehalogenase-like hydrolase fa...    27   9.0  
At2g04090.1 68415.m00392 MATE efflux family protein similar to r...    27   9.0  

>At5g11060.1 68418.m01292 homeobox protein knotted-1 like 4 (KNAT4)
           identical to homeobox protein knotted-1 like 4 ( KNAT4)
           SP:P48001 from [Arabidopsis thaliana]
          Length = 393

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = -2

Query: 158 CLKVISPIDLRHEINEQLAQIKGIISKF 75
           CL++ +P+D    I+ QLAQ + +++K+
Sbjct: 143 CLRIATPVDQLPRIDAQLAQSQNVVAKY 170


>At5g01690.1 68418.m00086 cation/hydrogen exchanger, putative
           (CHX27)  monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 732

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +3

Query: 462 FPYFKQNIILFCVIKKLQEQFKKNNPSFFYAKAIRREVIFNNL-FLFVCNVSKCQ 623
           F +  Q +   C+   +  + K+   +FFYA+++     F  + FLF+C ++ CQ
Sbjct: 66  FAFLTQMLAGICLGPSVIGRNKQYMATFFYARSVYIIESFEAICFLFICYITTCQ 120


>At5g25220.1 68418.m02990 homeobox protein knotted-1 like 3 (KNAT3)
           identical to homeobox protein knotted-1 like 3 (KNAT3)
           SP:P48000 from [Arabidopsis thaliana]
          Length = 431

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = -2

Query: 158 CLKVISPIDLRHEINEQLAQIKGIISKF 75
           CL++ +P+D    I+ QLAQ + +++K+
Sbjct: 179 CLRIATPVDQLPRIDAQLAQSQHVVAKY 206


>At3g49970.1 68416.m05464 phototropic-responsive protein, putative
           similar to root phototropism RPT2 [Arabidopsis thaliana]
           gi|6959488|gb|AAF33112, a signal transducer of
           phototropic response PMID:10662859
          Length = 526

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = -2

Query: 263 YQFVFSSDLPNIVSPYGMASITCPFRSFLNDVS*YCLKVISPIDLRHEINEQ 108
           ++ +  SD  + VS   +A    P +SF+N VS    K+I+P  L+    +Q
Sbjct: 466 FEVMSGSDCSSSVSTASVAKPRLPRKSFINSVSQKLGKLINPFGLKQGQTKQ 517


>At4g15090.1 68417.m02318 far-red impaired response protein (FAR1) /
           far-red impaired responsive protein (FAR1) identical to
           far-red impaired response protein FAR1 [Arabidopsis
           thaliana] gi|5764395|gb|AAD51282; contains Pfam:PF03101
           domain: FAR1 family
          Length = 768

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 498 VIKKLQEQFKKNNPSFFYAKAIRREVIFNNLF 593
           V+ +  ++ KK NP FFYA  +  +    NLF
Sbjct: 169 VLLEYFKRIKKENPKFFYAIDLNEDQRLRNLF 200


>At5g50375.1 68418.m06239 cyclopropyl isomerase (CPI1)
          Length = 280

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 405 WLFRDYLHQLFFFELICFLFPYFKQNIIL 491
           W   +  H  FF   +CFLF +   NI L
Sbjct: 121 WKMNNVPHTTFFLTHVCFLFYHVASNITL 149


>At4g25840.1 68417.m03717 haloacid dehalogenase-like hydrolase
           family protein low similarity to SP|Q08623 GS1 protein
           {Homo sapiens}; contains InterPro accession IPR005834:
           Haloacid dehalogenase-like hydrolase
          Length = 298

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +3

Query: 30  IPHYHHTFPWDYKTAELGDYSLNLSKLFID 119
           +  Y+ TF W  K   +G  ++  ++LF+D
Sbjct: 97  LARYNKTFDWSLKAKMMGRKAIEAARLFVD 126


>At2g04090.1 68415.m00392 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile PF01554:
           Uncharacterized membrane protein family
          Length = 483

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 561 IRREVIFNNLFLFVCNVSKCQTLIIRCKINIF 656
           + R  +F  +FL+    + C TL+  CK NIF
Sbjct: 329 VARLAVFAGIFLWFLEATICSTLLFTCK-NIF 359


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,272,483
Number of Sequences: 28952
Number of extensions: 281812
Number of successful extensions: 591
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)