Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0132
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    37   0.003
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    33   0.050
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    31   0.20 
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual     27   3.3  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    26   4.4  
SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces pom...    26   5.8  
SPAC19G12.11 |coq9||ubiquinone biosynthesis protein Coq9 |Schizo...    25   7.7  

>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 23/91 (25%), Positives = 42/91 (46%)
 Frame = +2

Query: 257 LDISYSQLPDFAEHSFRELGLSITRLKLNFDNLSVLKESVFTKLDLVDYFSLADNSLPEL 436
           LD+S+  L +        +   I RL L  + +  +   +  K   + Y ++  N L E 
Sbjct: 32  LDLSHLNLRELPYEQLERIQGRIARLALGHNFIKSIGPEIL-KFTRLRYLNIRSNVLREF 90

Query: 437 PRHVLQHLPHVKTLDLCRNKITKLPKKISGI 529
           P  + + L  ++ LD+ RNKI +LP+    +
Sbjct: 91  PESLCR-LESLEILDISRNKIKQLPESFGAL 120


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 32.7 bits (71), Expect = 0.050
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = +2

Query: 395 VDYFSLADNSLPELPRHVLQHLPHVKTLDLCRNKITKL 508
           V Y  LA+  L E+P+++   +P+++ LDL  N I+ +
Sbjct: 869 VRYLELANVQLKEVPKYIATSMPNLRVLDLSHNYISDI 906



 Score = 29.9 bits (64), Expect = 0.36
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +1

Query: 526 DIQELEHLLVADNQISEIEKDALPKGLKHVHLGINKLNTLNGA 654
           ++  LE LL+ +N+I EIE+ +  + L  + L  NKL  L  +
Sbjct: 733 NLHRLEELLLGNNEIEEIEEISSLQNLMVLQLDNNKLTNLKAS 775


>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
 Frame = +2

Query: 257 LDISYSQLPDFAEHSFRELGLSITRLKLNFDNLSVLKESVFT-KLDLVDYFSLADNSLPE 433
           +DI  + L D+ + +F   GLS ++ K  F  +S  K  + + ++   +     +N   +
Sbjct: 647 MDIQETFLQDYEDETFANEGLSASKFKEEFLLISDSKSDLNSEEIATPNSLEFKNNPRIK 706

Query: 434 LPRHVLQHL-----PHVKTLDLCRNKITKLPKKISGIFKN 538
           +PR +L  L       +K  ++C N   K P  +S   +N
Sbjct: 707 VPRSLLTILNLHDRSQLKLFEVCHNSEFKDPINLSNCLRN 746


>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 366

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 18/74 (24%), Positives = 32/74 (43%)
 Frame = +2

Query: 350 NLSVLKESVFTKLDLVDYFSLADNSLPELPRHVLQHLPHVKTLDLCRNKITKLPKKISGI 529
           N+  LKE+++  L+LV  ++      P+    V+    H    D C N    +   I   
Sbjct: 276 NIDELKETMWDYLNLVRVYTRPRGLEPDYSEPVILRTGHSTVEDFCNN----IHSSIKSQ 331

Query: 530 FKNWSICWSLTIKY 571
           FK+ +  W  ++ Y
Sbjct: 332 FKH-AYVWGKSVPY 344


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
 Frame = +2

Query: 305  RELGLSITRLK----LNFDNLSVLKESVFTKLDLVDYFSLADNSLPELPRHVLQHLPHVK 472
            ++L  +I++LK    L+ + +S L    F  +  V+   L DN L       L++   +K
Sbjct: 775  KKLTRTISQLKIMRTLSGNPVSSLSSQEFV-MPTVEELYLVDNRLGNDCFTALEYFKCLK 833

Query: 473  TLDLCRNKITKLPKKISGIFKNWS 544
             L+L  N +T++P K    F+N+S
Sbjct: 834  VLNLSYNYLTEIPSK---FFQNFS 854


>SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = -3

Query: 242 GTELIR*SSCDFFISVDALTDYQDSAGAGVLTSAGARGDFSSHG 111
           G+ ++  SS + ++    L DY  + GA    + G    ++ HG
Sbjct: 171 GSSIVNCSSINAYVGRPDLLDYTSTKGAITAFTRGLSNQYAQHG 214


>SPAC19G12.11 |coq9||ubiquinone biosynthesis protein Coq9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -1

Query: 553 PTNAPILEYPGNLLRELSYLVPTEIECLYVRQ 458
           P    I  YP NL + LS L     E LY+ Q
Sbjct: 141 PQMIAICTYPSNLRKSLSSLAELSDEILYLAQ 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,709,516
Number of Sequences: 5004
Number of extensions: 55113
Number of successful extensions: 143
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)