Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0132
         (682 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    38   1e-04
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   2.0  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   8.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   8.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   8.2  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   8.2  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 37.5 bits (83), Expect = 1e-04
 Identities = 26/81 (32%), Positives = 42/81 (51%)
 Frame = +2

Query: 257 LDISYSQLPDFAEHSFRELGLSITRLKLNFDNLSVLKESVFTKLDLVDYFSLADNSLPEL 436
           LD+S ++L    + + R+L L  T L L  + +S      F  LD +    L  N +  L
Sbjct: 436 LDLSGNELTSVPD-ALRDLALLKT-LDLGENRISNFYNGSFRNLDQLTGLRLIGNDIGNL 493

Query: 437 PRHVLQHLPHVKTLDLCRNKI 499
            R +L  LP+++ L+L RNK+
Sbjct: 494 SRGMLWDLPNLQILNLARNKV 514



 Score = 28.3 bits (60), Expect = 0.072
 Identities = 16/68 (23%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
 Frame = +2

Query: 332 LKLNFDNLSVLKESVFTKLDLVDYFSLADNSLPELPRHVLQHLPHVKTLDLCRNKITKLP 511
           L L+++ L+ +   +F  L  +    L +NS+  +  +    L ++ TL+L  NK+  + 
Sbjct: 340 LNLSYNMLTHIDARMFKDLFFLQILDLRNNSIDRIESNAFLPLYNLHTLELSDNKLRTVG 399

Query: 512 KKI-SGIF 532
            ++ +G+F
Sbjct: 400 AQLFNGLF 407



 Score = 27.9 bits (59), Expect = 0.095
 Identities = 21/88 (23%), Positives = 39/88 (44%)
 Frame = +2

Query: 257 LDISYSQLPDFAEHSFRELGLSITRLKLNFDNLSVLKESVFTKLDLVDYFSLADNSLPEL 436
           LD+S +++    E+S       +  L L  + +  +     T L ++  F+ + NSL  L
Sbjct: 217 LDLSRNEITRLQENSPLLDLRQLQELHLQRNAIVEIAGDALTGLTVLRTFNASYNSLDSL 276

Query: 437 PRHVLQHLPHVKTLDLCRNKITKLPKKI 520
           P  +      ++ + L  N +  LPK I
Sbjct: 277 PEGLFASTRDLREIHLAYNGLRDLPKGI 304



 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +2

Query: 467 VKTLDLCRNKITKL 508
           ++ LDL RN+IT+L
Sbjct: 214 IRILDLSRNEITRL 227



 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 467 VKTLDLCRNKITKL 508
           VKTLD   N+IT+L
Sbjct: 597 VKTLDASHNRITEL 610


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 21/66 (31%), Positives = 33/66 (50%)
 Frame = +2

Query: 338 LNFDNLSVLKESVFTKLDLVDYFSLADNSLPELPRHVLQHLPHVKTLDLCRNKITKLPKK 517
           L+FD  S+LKE+  T  + +     AD+ L  +    +    H+K + +  NK+T     
Sbjct: 375 LSFDKQSLLKENTVTCQEAMHMLKNADSQLLVISDDNI----HIKGV-ISLNKLTSY--V 427

Query: 518 ISGIFK 535
           ISGI K
Sbjct: 428 ISGIVK 433


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 393 KSNLVKTLSFSTLRLSKFNF 334
           KSN+ KTL F    + +F +
Sbjct: 51  KSNMAKTLQFDVHMMLQFRY 70


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = +2

Query: 539 WSICWSLT 562
           W ICW++T
Sbjct: 491 WKICWTIT 498


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = +2

Query: 539 WSICWSLT 562
           W ICW++T
Sbjct: 544 WKICWTIT 551


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 671 SSKSLRAPFNVFNLLIPRCTCF 606
           ++KSLR P N+F + +  C  F
Sbjct: 75  AAKSLRTPSNMFVVNLAICDFF 96


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,953
Number of Sequences: 438
Number of extensions: 3693
Number of successful extensions: 19
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)