Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0131
         (749 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   2.2  
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    27   2.2  
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa...    27   2.9  
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    27   2.9  
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    27   2.9  
SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr 3...    27   2.9  
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    27   3.8  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    26   5.0  
SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces...    26   5.0  
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    26   6.6  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   6.6  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    26   6.6  
SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces pom...    25   8.7  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    25   8.7  

>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 230

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
 Frame = +3

Query: 336 ATPKRVETIASIN-KRDINTTALPASPTRSIDSLSQRSLSYQTDDLYE---IPGNPGAQY 503
           ATP+     AS++      +T  P+   R+  S S  S S  T    +      +P +  
Sbjct: 23  ATPRTFAPSASVSINYGTLSTVFPSLYRRASTSSSSSSSSISTSHDSQPSTSSSSPSSTS 82

Query: 504 PPLFTKT*IITVNSVHHNHHIITSSTNRVYH 596
               + T +IT + V  ++ II+SSTN   H
Sbjct: 83  TSSSSGTSVITASDVSASNEIISSSTNNSIH 113


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
 Frame = +3

Query: 198 NFGSEPFRQKSSGRRNRELVLDNTQQNTRQDYSFYERSNVIASSKFATPKRVET--IASI 371
           N G+E  +      R R        QN  + + FY  +NVI++S   T   + T      
Sbjct: 99  NEGNEYDQTPDISARKRRKHFRMLPQNNFRYFQFYGTTNVISASNLTTTSEIPTFKFPIF 158

Query: 372 NKRDINTT 395
           +KR  N T
Sbjct: 159 SKRKYNDT 166


>SPBC31F10.04c |srb4|med17|mediator complex subunit
           Srb4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 2/97 (2%)
 Frame = +3

Query: 183 GARGYNFGSEPFRQKSSGRRNRELVLDNTQQNTRQDYSFYERSNVIASSKFATPKRVETI 362
           G +G NF  +      S      + L+ + +NT   ++  ++SN   S+ F T K+ + +
Sbjct: 322 GNQGVNFTGDEILVPISDDHVVRITLETSSKNTESGFTEDKKSNEDTSTNFVTIKQEKEL 381

Query: 363 ASINKRDINTTA--LPASPTRSIDSLSQRSLSYQTDD 467
                  +N  A  L     R  D  SQ+   Y   D
Sbjct: 382 LKCLCDTLNAIAHILFLKHCRKSDRRSQQPELYMAID 418


>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = +3

Query: 435 SQRSLSYQTDDLYEIPGNPGAQYPPLFTKT*IITVNSVHHNHHIITSSTNRV 590
           S  S S +++  Y IP    + Y PL  ++   T++++ H+   ITS  NRV
Sbjct: 702 SNTSGSAKSEGYYIIPTTEKSLYLPLRNRS---TIDTISHSTSRITSRMNRV 750


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -3

Query: 339 SQIWTKLSHLIVHKNYNLDECFAEY 265
           +Q++T LS+ I +  + LDECF E+
Sbjct: 579 NQVFTLLSNFIQNPLFVLDECFDEF 603


>SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 227

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = -1

Query: 743 FVYLYSPFLSLSALSIFSYSAGIAL 669
           F  L+S FLSL   S F Y  GIAL
Sbjct: 101 FCLLFSTFLSLHGRSHFGYIYGIAL 125


>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 19/66 (28%), Positives = 31/66 (46%)
 Frame = +3

Query: 264 NTQQNTRQDYSFYERSNVIASSKFATPKRVETIASINKRDINTTALPASPTRSIDSLSQR 443
           NTQ N     S +E  NV +S      + ++   S+N  +   TA+   P RS+ SL+  
Sbjct: 155 NTQNNQSTLASNHEDENVSSSGG----QEMQDHGSVNNLESPGTAIGRLPVRSVTSLADS 210

Query: 444 SLSYQT 461
           ++   T
Sbjct: 211 NMEDYT 216


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 587 GIPPPVSDGYYDTRYSKAQP 646
           G PP + +G YDTR   A P
Sbjct: 360 GYPPQIVEGNYDTRLPSALP 379


>SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 5/81 (6%)
 Frame = +1

Query: 85  MDSSRRNNTDEQRCVLGLQDLKISKKVEDG-----TEQAQGATTSAPSPLGKSRPVGAIE 249
           +DS   ++T +        D  +SK +EDG      E+      +A  P  ++ PV  + 
Sbjct: 29  LDSMETDSTGKSSLYFSKSDDPLSKDIEDGISTRKLEEMSVLEANAKEPDSENAPVSRLT 88

Query: 250 SLYSIILSKTLVKIIVFMNDQ 312
             +++        ++  +N Q
Sbjct: 89  IFFAVSSQIVFAILVTILNKQ 109


>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 20/88 (22%), Positives = 41/88 (46%)
 Frame = +3

Query: 261 DNTQQNTRQDYSFYERSNVIASSKFATPKRVETIASINKRDINTTALPASPTRSIDSLSQ 440
           ++ + + +  Y+  +R   + +   +TP R+    S    D++T +   + T S +++SQ
Sbjct: 315 ESRKSSFQSSYNDADRPFQVGAQTQSTPNRISRSDSPIVYDVDTHSEDNASTASSEAISQ 374

Query: 441 RSLSYQTDDLYEIPGNPGAQYPPLFTKT 524
              S+Q         N G+ + P FT T
Sbjct: 375 SMRSFQPQP------NTGSPF-PRFTST 395


>SPBC23E6.09 |ssn6||transcriptional corepressor
            Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
 Frame = +3

Query: 165  RGWN*AGARG-YNFGSEPFRQKSSGRRNRELVLDNTQQNTRQD-YSFYERSNVIASSKFA 338
            RG + +G+R   +    P  + S   R+R   + N     R +  S   R    ++S  +
Sbjct: 813  RGKHASGSRNSISSTKSPQHKLSDQPRSRNNSISNVSHRERSNSVSSKSRETRTSASNES 872

Query: 339  TPKRVETIASINKRDINTTALPASPTRSIDSLSQRSLSYQ 458
             PK+  T    +K+  N+T +  SP+ S  S + +S+  Q
Sbjct: 873  DPKK-STQRDSSKKLENSTVVSGSPSSSSKSDAAKSIKPQ 911


>SPAC110.02 |pds5||cohesin-associated protein
           Pds5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1205

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -2

Query: 160 FLKFSNLEDQVHTVVHRYCFSLKNPWSELLKSMVFLY 50
           F KF+ L D+    +    FS+K+ +  +LKS+ +L+
Sbjct: 562 FRKFAELNDRQSYKMLLQTFSIKSEYQVVLKSIKYLF 598


>SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 304

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -3

Query: 747 LFCVFIFTFLITVC 706
           L C FIFTFL+ +C
Sbjct: 193 LICWFIFTFLVLLC 206


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 22/90 (24%), Positives = 38/90 (42%)
 Frame = +3

Query: 222 QKSSGRRNRELVLDNTQQNTRQDYSFYERSNVIASSKFATPKRVETIASINKRDINTTAL 401
           Q +SG  +    + +T      + + Y  S+  +S  ++T   V T  S    DI T   
Sbjct: 137 QTNSGHASASTSIPSTAITVTANSTIY--SSATSSFPYSTDVSVSTGTST---DIVTLPP 191

Query: 402 PASPTRSIDSLSQRSLSYQTDDLYEIPGNP 491
           PAS T S  +++  S+   +       G+P
Sbjct: 192 PASSTSSFSTITNTSMIPSSSSFTTTTGSP 221


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,961,639
Number of Sequences: 5004
Number of extensions: 59278
Number of successful extensions: 194
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)