Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0131
         (749 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57373| Best HMM Match : DUF292 (HMM E-Value=4.7)                    29   3.0  
SB_59483| Best HMM Match : DUF402 (HMM E-Value=3.8)                    29   3.0  
SB_20684| Best HMM Match : zf-C2H2 (HMM E-Value=5.8)                   29   3.0  
SB_45345| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_3077| Best HMM Match : fn3 (HMM E-Value=8e-28)                      29   5.3  
SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  
SB_20363| Best HMM Match : Involucrin (HMM E-Value=0.31)               28   9.3  
SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)                  28   9.3  

>SB_57373| Best HMM Match : DUF292 (HMM E-Value=4.7)
          Length = 383

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +3

Query: 165 RGWN*AGARGYNFGSEPFRQKSSGRRNRELVLDN 266
           R W+ AG RG N    PF+     RR  E+VL N
Sbjct: 8   RQWHQAGQRGSNEAFRPFKLFRGSRRLHEVVLFN 41


>SB_59483| Best HMM Match : DUF402 (HMM E-Value=3.8)
          Length = 796

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +3

Query: 165 RGWN*AGARGYNFGSEPFRQKSSGRRNRELVLDN 266
           R W+ AG RG N    PF+     RR  E+VL N
Sbjct: 303 RQWHQAGQRGSNEALRPFKLFRGSRRLHEVVLFN 336


>SB_20684| Best HMM Match : zf-C2H2 (HMM E-Value=5.8)
          Length = 395

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +3

Query: 165 RGWN*AGARGYNFGSEPFRQKSSGRRNRELVLDN 266
           R W+ AG RG N    PF+     RR  E+VL N
Sbjct: 303 RQWHQAGQRGSNEALRPFKLFRGSRRLHEVVLFN 336


>SB_45345| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2346

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 276  NTRQDYSFYERSNVIASSKFATPKRV 353
            +T +D  F+   NV++S+KFAT  R+
Sbjct: 1381 STNKDIKFHPYHNVVSSTKFATTDRI 1406


>SB_3077| Best HMM Match : fn3 (HMM E-Value=8e-28)
          Length = 465

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 20/90 (22%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
 Frame = -1

Query: 737 YLYSPFLSLSALSIFSYSAGIALDFVLTGTAVELCCTECRSIRQTQEVVYPVGRAGD--- 567
           Y + P++++S  ++  +   I  D      A+ LCC++C +   T  V +    AG+   
Sbjct: 325 YNFPPYVNISETNLDGFLPQILAD------AIALCCSDCVNGFGTSRVDFLRDSAGNLAK 378

Query: 566 --NMVVVVNAVHRNNLRFRKQGWVLRTRVP 483
             N+V + ++++  ++ F   G+  +T  P
Sbjct: 379 KRNVVALTSSINYTDIAFPVPGYKGQTTYP 408


>SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 476

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = +3

Query: 375 KRDINTTALPASPTRSIDSLSQRS--LSYQTD-DLYEIPGNPGAQYPPLF 515
           +RD N TALP  PT  +D     S  LS   +  + E P  P A  P  F
Sbjct: 269 QRDPNDTALPPVPTLPVDKAKMDSEYLSLMAELGVGEAPPPPAASEPAAF 318


>SB_20363| Best HMM Match : Involucrin (HMM E-Value=0.31)
          Length = 353

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 2/91 (2%)
 Frame = +3

Query: 222 QKSSGRRNRELVLDNTQQNTRQDYSFYERSNVIASSKFATPKRVETIASINKRDINTTAL 401
           Q  S + N E  L +T QNT Q  S    SN+    +     + E+  S++ +   T   
Sbjct: 261 QSGSKQPNSE-ELQSTHQNTPQSSSSSSTSNISGVDQQKQATQQESQTSVSPQTSGTDQS 319

Query: 402 PASPTRS--IDSLSQRSLSYQTDDLYEIPGN 488
            +SP         SQ ++S Q+    E P N
Sbjct: 320 QSSPLEKEVAKQESQPNVSPQSGGKQESPAN 350


>SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)
          Length = 2123

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 2/91 (2%)
 Frame = +3

Query: 222 QKSSGRRNRELVLDNTQQNTRQDYSFYERSNVIASSKFATPKRVETIASINKRDINTTAL 401
           Q  S + N E  L +T QNT Q  S    SN+    +     + E+  S++ +   T   
Sbjct: 539 QSGSKQPNSE-ELQSTHQNTPQSSSSSSTSNISGVDQQKQATQQESQTSVSPQTSGTDQS 597

Query: 402 PASPTRS--IDSLSQRSLSYQTDDLYEIPGN 488
            +SP         SQ ++S Q+    E P N
Sbjct: 598 QSSPLEKEVAKQESQPNVSPQSGGKQESPAN 628


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,999,768
Number of Sequences: 59808
Number of extensions: 437823
Number of successful extensions: 1304
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1303
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)