Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0131
         (749 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF163019-1|AAD49324.1| 1312|Caenorhabditis elegans trithorax-rel...    30   1.5  
AF039718-1|AAB96746.1| 1312|Caenorhabditis elegans Abnormal cell...    30   1.5  
U67953-4|AAL13329.1|  732|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AF016674-7|AAB66126.2|  415|Caenorhabditis elegans C-type lectin...    28   8.1  
AC024801-6|AAP86611.1|  197|Caenorhabditis elegans Hypothetical ...    28   8.1  

>AF163019-1|AAD49324.1| 1312|Caenorhabditis elegans trithorax-related
            protein LIN-59 protein.
          Length = 1312

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = +1

Query: 154  SKKVEDGTEQAQGATTSAPSPLGKSR---PVGAIESLYSI 264
            SKK +D   +A+  +TS PSP+   R    +  +ESLY I
Sbjct: 908  SKKAKDNAPRARALSTSCPSPVPSKRGDADLSYLESLYPI 947


>AF039718-1|AAB96746.1| 1312|Caenorhabditis elegans Abnormal cell
            lineage protein 59 protein.
          Length = 1312

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = +1

Query: 154  SKKVEDGTEQAQGATTSAPSPLGKSR---PVGAIESLYSI 264
            SKK +D   +A+  +TS PSP+   R    +  +ESLY I
Sbjct: 908  SKKAKDNAPRARALSTSCPSPVPSKRGDADLSYLESLYPI 947


>U67953-4|AAL13329.1|  732|Caenorhabditis elegans Hypothetical
           protein ZC13.3 protein.
          Length = 732

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
 Frame = +3

Query: 222 QKSSGRRNRELVLDNTQQNTRQDYSFYERSN--VIASSKFATPKRVETIASINKRDINTT 395
           Q  SG +NR LV+D      + D S  E ++   +   +   PK V TIA   KR I TT
Sbjct: 407 QWESGLKNRFLVIDEIAYIGQCDKSKLEPTSQAPLILGRTTQPKEV-TIAG-TKRRIQTT 464

Query: 396 ALPASPTRSIDSLSQRSL 449
             P + T  +  + +  +
Sbjct: 465 PTPTTTTTQVPEIEEEEV 482


>AF016674-7|AAB66126.2|  415|Caenorhabditis elegans C-type lectin
           protein 10 protein.
          Length = 415

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 18/52 (34%), Positives = 23/52 (44%)
 Frame = +1

Query: 577 LPTGYTTSCV*RILRHSVQQSSTAVPVNTKSKAIPALYENMLSADSDKKGEY 732
           LPT Y  SC      +    SSTAVP  T  K       N++S  S  + +Y
Sbjct: 151 LPTTYQDSCSYNYNGYCYTFSSTAVPFVTAQKICELSCGNLVSIHSPNELQY 202


>AC024801-6|AAP86611.1|  197|Caenorhabditis elegans Hypothetical
           protein Y50D7A.11 protein.
          Length = 197

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +2

Query: 95  QGETIPMNNGVYLVFKI*KFQKKSRMELSRRK 190
           + +++PM NGV+ + KI +F    ++E+ R K
Sbjct: 162 EAKSVPMQNGVWNLVKICEFWGTDKIEIFREK 193


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,279,825
Number of Sequences: 27780
Number of extensions: 336937
Number of successful extensions: 966
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)