Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0131
         (749 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.    23   4.0  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   5.3  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   5.3  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   9.3  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    21   9.3  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   9.3  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.3  

>U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.
          Length = 53

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 738 VFIFTFLITVCAKHIFI 688
           +FIF  L T+CA   ++
Sbjct: 5   IFIFALLATICAAFAYV 21


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 207 SEPFRQKSSGRR-NRELVLDNTQQNTRQDYSFYERSNVIASSKF 335
           +E F  +  G+  + EL+L    +  R+D   Y   +++AS  F
Sbjct: 413 TEYFEHRYQGKFFDEELILGELSEKLREDVINYNCRSLVASVPF 456


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 207 SEPFRQKSSGRR-NRELVLDNTQQNTRQDYSFYERSNVIASSKF 335
           +E F  +  G+  + EL+L    +  R+D   Y   +++AS  F
Sbjct: 381 TEYFEHRYQGKFFDEELILGELSEKLREDVINYNCRSLVASVPF 424


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +1

Query: 367 LSINGILIRLLSL 405
           LSING LIR++++
Sbjct: 163 LSINGALIRIIAI 175


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +1

Query: 367 LSINGILIRLLSL 405
           LSING LIR++++
Sbjct: 129 LSINGALIRIIAI 141


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +1

Query: 367 LSINGILIRLLSL 405
           LSING LIR++++
Sbjct: 39  LSINGALIRIIAI 51


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +3

Query: 534 TVNSVHHNHHIITSSTNRVYH 596
           T+   HH+HH  T S   +++
Sbjct: 346 TMGPPHHHHHHQTQSLQHLHY 366


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,917
Number of Sequences: 438
Number of extensions: 4457
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)