Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0131
         (749 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g16520.3 68416.m02110 UDP-glucoronosyl/UDP-glucosyl transfera...    31   0.82 
At3g16520.2 68416.m02109 UDP-glucoronosyl/UDP-glucosyl transfera...    31   0.82 
At3g16520.1 68416.m02108 UDP-glucoronosyl/UDP-glucosyl transfera...    31   0.82 
At2g37980.1 68415.m04662 expressed protein similar to axi 1 [Nic...    30   1.4  
At1g09010.1 68414.m01005 glycoside hydrolase family 2 protein lo...    28   5.8  
At4g35470.1 68417.m05041 leucine-rich repeat family protein simi...    28   7.6  
At2g17010.1 68415.m01961 mechanosensitive ion channel domain-con...    28   7.6  

>At3g16520.3 68416.m02110 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 462

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 21/75 (28%), Positives = 31/75 (41%)
 Frame = +3

Query: 255 VLDNTQQNTRQDYSFYERSNVIASSKFATPKRVETIASINKRDINTTALPASPTRSIDSL 434
           VLD T   T   Y FY       +  F  P   ET    N +DI T  +P  P      +
Sbjct: 125 VLDITADFTFPVYFFYTSGAACLAFSFYLPTIDETTPGKNLKDIPTVHIPGVPPMKGSDM 184

Query: 435 SQRSLSYQTDDLYEI 479
            +  L  + D++Y++
Sbjct: 185 PKAVLE-RDDEVYDV 198


>At3g16520.2 68416.m02109 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 446

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 21/75 (28%), Positives = 31/75 (41%)
 Frame = +3

Query: 255 VLDNTQQNTRQDYSFYERSNVIASSKFATPKRVETIASINKRDINTTALPASPTRSIDSL 434
           VLD T   T   Y FY       +  F  P   ET    N +DI T  +P  P      +
Sbjct: 125 VLDITADFTFPVYFFYTSGAACLAFSFYLPTIDETTPGKNLKDIPTVHIPGVPPMKGSDM 184

Query: 435 SQRSLSYQTDDLYEI 479
            +  L  + D++Y++
Sbjct: 185 PKAVLE-RDDEVYDV 198


>At3g16520.1 68416.m02108 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 451

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 21/75 (28%), Positives = 31/75 (41%)
 Frame = +3

Query: 255 VLDNTQQNTRQDYSFYERSNVIASSKFATPKRVETIASINKRDINTTALPASPTRSIDSL 434
           VLD T   T   Y FY       +  F  P   ET    N +DI T  +P  P      +
Sbjct: 125 VLDITADFTFPVYFFYTSGAACLAFSFYLPTIDETTPGKNLKDIPTVHIPGVPPMKGSDM 184

Query: 435 SQRSLSYQTDDLYEI 479
            +  L  + D++Y++
Sbjct: 185 PKAVLE-RDDEVYDV 198


>At2g37980.1 68415.m04662 expressed protein similar to axi 1
           [Nicotiana tabacum] GI:559921; contains Pfam profile
           PF03138: Plant protein family
          Length = 638

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +1

Query: 91  SSRRNNTDEQRCVLGLQDLKISKKVEDGTEQAQGATTSAPSPLGKS 228
           +S R +     C     ++ IS  ++DG    QG   S+PS +G S
Sbjct: 32  TSERPSISSDYCNTNTVNIAISPDIDDGETGLQGGACSSPSSIGSS 77


>At1g09010.1 68414.m01005 glycoside hydrolase family 2 protein low
           similarity to mannosidase [gi:5359712] from Cellulomonas
           fimi
          Length = 944

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 345 WESQIWTKLSHLIVHKNYN 289
           W SQ+WTK + +++ KN N
Sbjct: 640 WSSQMWTKYTGVLIWKNQN 658


>At4g35470.1 68417.m05041 leucine-rich repeat family protein similar
           to Leucine-rich repeat protein SHOC-2 (Ras-binding
           protein Sur-8) (SP:Q9UQ13 ){Homo sapiens},PIR:T12704;
           contains Pfam PF00560: Leucine Rich Repeat domains
          Length = 549

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +3

Query: 312 NVIASSKFATPKRVETIASINKRDINTTALPASPTRSIDSL-SQRSLSYQTDDLYEIPGN 488
           N+ ++   + P     +  + + D++   LP  P  SI SL S + L  +T+D+ EIP +
Sbjct: 298 NLGSNQLSSLPSAFSRLVRLEELDLSCNNLPILP-ESIGSLVSLKKLDVETNDIEEIPYS 356

Query: 489 PG 494
            G
Sbjct: 357 IG 358


>At2g17010.1 68415.m01961 mechanosensitive ion channel
           domain-containing protein / MS ion channel
           domain-containing protein contains Pfam profile PF00924:
           Mechanosensitive ion channel
          Length = 779

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
 Frame = +3

Query: 210 EPFRQKSSGRRNRELVLDNTQQNTRQDYSFYERSNVIASSKFATPKRVETIASINKRDIN 389
           EP  ++  GR N E+ LD  Q+N   D S        ++++ +     E   S N R   
Sbjct: 129 EPVNRQWRGRNNEEITLDVDQEN--DDVSHQTMPTPTSTARTSFDASREMRVSFNVRRAG 186

Query: 390 TTALPAS-PTRSIDSLSQRSLSYQTD 464
              +  S P+ S  S S  S + +T+
Sbjct: 187 GAFVAGSVPSSSSHSSSSSSATMRTN 212


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,165,147
Number of Sequences: 28952
Number of extensions: 302288
Number of successful extensions: 800
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)