Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0130
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G5.07c |rpc25||DNA-directed RNA polymerase III complex subu...    28   1.1  
SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom...    26   6.0  

>SPBC2G5.07c |rpc25||DNA-directed RNA polymerase III complex subunit
           Rpc25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 203

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -1

Query: 180 SDIT*IHNSETFKLVKFTDQERANNFFFNEILNDVGQADCIF 55
           SDI  IH S  +K  K    E  +  + N+++ ++G A C++
Sbjct: 8   SDIISIHPSNFWKPTKEALAEEIHKKYANKVIQNIGLAICVY 49


>SPCC1235.10c |sec6||exocyst complex subunit
           Sec6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 730

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = -2

Query: 164 YTTVKLSSL*NSLIKNEQIIFFLMKF*MMLDKQIVFFLGFRYRLS-LTELKHE 9
           Y T ++ S  N+L+K   +I  +++  + LD  +   L   Y+LS L E + E
Sbjct: 86  YATKQMISQLNNLVKETDVIEDMLREDLELDSDMPNLLRAHYKLSKLREFREE 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,620,881
Number of Sequences: 5004
Number of extensions: 49394
Number of successful extensions: 116
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)