Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0130
         (705 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0628 - 5460030-5462960                                           30   2.1  
06_03_1274 + 28897491-28897707,28897804-28897935,28898029-288980...    29   2.7  

>08_01_0628 - 5460030-5462960
          Length = 976

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +3

Query: 381 RRTAYEQAPGEFKHIELLSALQTPTWQMIRELPESPSKSK 500
           R T  E+ P +   ++ L  L T  W M+++LP S SK K
Sbjct: 647 RSTFIEELPKDLGKLQKLQTLDTK-WSMVQKLPSSLSKLK 685


>06_03_1274 +
           28897491-28897707,28897804-28897935,28898029-28898096,
           28898216-28898280,28898468-28898534,28898630-28898917,
           28898995-28899102,28899236-28899487,28899918-28899997,
           28900092-28900185,28900728-28900810,28901319-28901873,
           28902085-28902616
          Length = 846

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = -3

Query: 445 CRADNNSICLNSPGACSYAVLRVLRSEQNYTHITVLSLTENFGFNNASGTF 293
           C A +NS   ++P AC +    ++  + N   + +LSL + +   N  G +
Sbjct: 492 CDASSNSAKSSTPDACFFFADNLVVVDHNNGDVYILSLHDEYSSGNGDGDY 542


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,855,588
Number of Sequences: 37544
Number of extensions: 283791
Number of successful extensions: 632
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)