Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0130
         (705 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9469| Best HMM Match : IRK (HMM E-Value=0)                          34   0.098
SB_59754| Best HMM Match : rve (HMM E-Value=8e-19)                     32   0.39 
SB_58802| Best HMM Match : Gag_spuma (HMM E-Value=2.7)                 30   1.6  
SB_25350| Best HMM Match : Collagen (HMM E-Value=0)                    29   4.9  
SB_830| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   6.4  

>SB_9469| Best HMM Match : IRK (HMM E-Value=0)
          Length = 520

 Score = 34.3 bits (75), Expect = 0.098
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = +2

Query: 278 YEMARECAARIIETKILSQAKNSYVGVILLGSKNTKNSVRTSSWRVQTYRI 430
           +E+       +  T +L+QAK SY+G  +L     KN++  +SW+   +R+
Sbjct: 341 FELVAILEGTVEATGMLTQAKTSYIGEEILWGYEFKNTLDHTSWKAGRFRV 391


>SB_59754| Best HMM Match : rve (HMM E-Value=8e-19)
          Length = 1065

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +1

Query: 358 NSARIEEHEEQRTNKLLESSNI*NCYPPCKHLLGK*LGNYRSRPASLKAIDGCSN 522
           N A++++ ++ +   L  +S    C PP  H L   L +Y S   S+ A D C +
Sbjct: 373 NLAKLKDSKDSQLWILANTSRSPGCSPPLTHHLADVLAHYDSNKQSIVAADACQD 427


>SB_58802| Best HMM Match : Gag_spuma (HMM E-Value=2.7)
          Length = 810

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = -3

Query: 460 CQVGVCRADNNSICLNSPGACSYAVLRVLRSEQNYTHITVLSLTENFGFNNASGTFT 290
           C   VC  D   + + SP   S    R  R   N+T +T      +F F + SG+FT
Sbjct: 223 CHKSVCSGDGKQVHVISPDEASIVQERKRRRINNHTGLT--QDLNDFEFRDRSGSFT 277


>SB_25350| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 1112

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = -2

Query: 296  IHAPSHKSFFCLFHGICNVSSIIQNYYQALIYFRRH 189
            ++ PS    FCL  G+  V+++I + Y A +Y++++
Sbjct: 1057 MYPPSLIDAFCLLTGMLAVAAVIPSAYFAYLYYQKY 1092


>SB_830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1390

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +3

Query: 372  RRTRRTAYEQAPGEFKHIELLSALQTPTWQMIRELPESPSKSKG 503
            +R   T Y  +PG    +  LS    P++   +ELP  P  S+G
Sbjct: 929  KRQNMTGYYASPGGINSLGSLSISAQPSYNSPQELPTPPLISQG 972


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,978,485
Number of Sequences: 59808
Number of extensions: 351068
Number of successful extensions: 797
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)