Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0129
(646 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 52 5e-08
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po... 44 2e-05
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa... 42 1e-04
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch... 36 0.007
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 27 2.3
SPBC13A2.03 |||phosphatidate cytidylyltransferase|Schizosaccharo... 27 2.3
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 27 3.1
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom... 26 5.3
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac... 25 7.1
SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating ... 25 7.1
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S... 25 9.3
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 52.4 bits (120), Expect = 5e-08
Identities = 21/31 (67%), Positives = 23/31 (74%)
Frame = +1
Query: 112 DRRIKNGVLEYYLKWKGYSDEDNTWEPEDNL 204
DR KNG+ EYY+KW GY DNTWEPE NL
Sbjct: 30 DRVNKNGINEYYIKWAGYDWYDNTWEPEQNL 60
>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 44.0 bits (99), Expect = 2e-05
Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 4/46 (8%)
Frame = +1
Query: 106 VLDRRIKN--GVLEYYLKWKGYSD-EDNTW-EPEDNLDCPDLIQAF 231
+LD R+K +YYLKW+GY D DNTW + ED C +LI A+
Sbjct: 181 ILDSRMKKDGSGFQYYLKWEGYDDPSDNTWNDEEDCAGCLELIDAY 226
>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
Swi6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 41.5 bits (93), Expect = 1e-04
Identities = 20/38 (52%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +1
Query: 124 KNGVLEYYLKWKGYSD-EDNTWEPE-DNLDCPDLIQAF 231
K G EY LKW+GY D DNTW E D C LI+A+
Sbjct: 94 KGGGYEYLLKWEGYDDPSDNTWSSEADCSGCKQLIEAY 131
>SPBC428.08c |clr4||histone H3 methyltransferase
Clr4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 490
Score = 35.5 bits (78), Expect = 0.007
Identities = 13/35 (37%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Frame = +1
Query: 106 VLDRRI-KNGVLEYY-LKWKGYSDEDNTWEPEDNL 204
++D ++ +NG ++ Y ++W YS +TWEP +NL
Sbjct: 13 IVDEKLDRNGAVKLYRIRWLNYSSRSDTWEPPENL 47
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 27.1 bits (57), Expect = 2.3
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +1
Query: 139 EYYLKWKGYSDEDNTWEPEDNL 204
E+ +KW +S TWEP +N+
Sbjct: 215 EFLIKWVNFSHLHCTWEPYNNI 236
>SPBC13A2.03 |||phosphatidate
cytidylyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 439
Score = 27.1 bits (57), Expect = 2.3
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +2
Query: 53 TRKKKTNQKPKRNFLLKKFWTGALRMVFW 139
T+ K +KP +NF+ + WT L +F+
Sbjct: 39 TKHKSLARKPSQNFITRTIWTFLLLGIFF 67
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 26.6 bits (56), Expect = 3.1
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +1
Query: 124 KNGVLEYYLKWKGYSDEDNTWEPED 198
+ G EY++KW+ ++ TWE D
Sbjct: 316 EEGKTEYFVKWRQLPYDNCTWEDAD 340
>SPBC691.05c ||SPBP22H7.01c|membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 668
Score = 25.8 bits (54), Expect = 5.3
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -1
Query: 199 YPLVPMYYLHHCILSISSNI 140
YPL P++ L +C+L I S++
Sbjct: 513 YPLAPIFSLVNCVLYIRSSV 532
>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 574
Score = 25.4 bits (53), Expect = 7.1
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -1
Query: 478 GTRSASSVPCHFMRNMSSPLLSVAPIIFSGSNPRSKP 368
G S +P M N+SSPL++ +P SG NP +P
Sbjct: 401 GPNSIYKIPSASMVNLSSPLVT-SP---SGLNPTGRP 433
>SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating
kinase Crk1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 335
Score = 25.4 bits (53), Expect = 7.1
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +1
Query: 286 IQRSVNQPQPHLISKVQRKPKVMTRKHL 369
I R++ P+P +I +Q+ P + KH+
Sbjct: 220 IFRALGTPEPEVIKSMQQLPNYVEMKHI 247
>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 25.0 bits (52), Expect = 9.3
Identities = 11/25 (44%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Frame = +1
Query: 280 IRIQRSVNQ-PQPHLISKVQRKPKV 351
I+ +RS+++ PQ ++ KV +KPKV
Sbjct: 111 IKQKRSLSESPQESMLEKVSKKPKV 135
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,316,915
Number of Sequences: 5004
Number of extensions: 44265
Number of successful extensions: 125
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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