Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0129
         (646 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39782| Best HMM Match : Chromo_shadow (HMM E-Value=1.4e-23)         66   3e-11
SB_54925| Best HMM Match : MFS_1 (HMM E-Value=4.7e-27)                 55   4e-08
SB_32465| Best HMM Match : Chromo (HMM E-Value=3.5e-16)                55   6e-08
SB_26989| Best HMM Match : Chromo (HMM E-Value=5.5e-10)                47   1e-05
SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.049
SB_23869| Best HMM Match : rve (HMM E-Value=2.2e-16)                   30   1.4  
SB_4658| Best HMM Match : HTH_psq (HMM E-Value=0)                      29   3.2  
SB_51384| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_28997| Best HMM Match : rve (HMM E-Value=2.3e-10)                   28   7.5  
SB_21158| Best HMM Match : Chromo (HMM E-Value=0.00035)                28   7.5  
SB_58697| Best HMM Match : Chromo (HMM E-Value=5.5e-09)                27   9.9  
SB_47174| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_39782| Best HMM Match : Chromo_shadow (HMM E-Value=1.4e-23)
          Length = 226

 Score = 65.7 bits (153), Expect = 3e-11
 Identities = 24/42 (57%), Positives = 33/42 (78%)
 Frame = +1

Query: 106 VLDRRIKNGVLEYYLKWKGYSDEDNTWEPEDNLDCPDLIQAF 231
           V+D+R+ NG +EY LKWKGY D +NTWE E+ L CP+LI+ +
Sbjct: 33  VMDKRVINGGIEYLLKWKGYPDSENTWESEEGLQCPELIEEY 74



 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 27/71 (38%), Positives = 46/71 (64%), Gaps = 6/71 (8%)
 Frame = +3

Query: 381 GLEPEKIIGATDSSGELMFLMKWQGTDEADLVPAKQANVRCPQ*LFNFMK------KGSH 542
           G E + I+GAT+  G++ FL++W+ TD ADL+P+K AN++ PQ +  F +      +G  
Sbjct: 128 GWEADTILGATEVDGQIHFLIQWKSTDRADLIPSKVANLKWPQIVIKFYEERVTWTQGEG 187

Query: 543 GTHQHSMKEIM 575
           G HQ +M+ ++
Sbjct: 188 GQHQETMRGLI 198



 Score = 31.1 bits (67), Expect = 0.80
 Identities = 12/49 (24%), Positives = 28/49 (57%)
 Frame = +3

Query: 387 EPEKIIGATDSSGELMFLMKWQGTDEADLVPAKQANVRCPQ*LFNFMKK 533
           E EK++     +G + +L+KW+G  +++     +  ++CP+ +  + KK
Sbjct: 29  EVEKVMDKRVINGGIEYLLKWKGYPDSENTWESEEGLQCPELIEEYEKK 77


>SB_54925| Best HMM Match : MFS_1 (HMM E-Value=4.7e-27)
          Length = 1373

 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 22/43 (51%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
 Frame = +1

Query: 106  VLDRRIKNGVLEYYLKWKGYSDEDNTWEPEDNL-DCPDLIQAF 231
            +LDRR++ G +EY ++WKGY   D+TWEP  NL  C +LI  F
Sbjct: 910  ILDRRVQRGKVEYLVRWKGYGPADDTWEPSKNLKGCKELIDNF 952


>SB_32465| Best HMM Match : Chromo (HMM E-Value=3.5e-16)
          Length = 411

 Score = 54.8 bits (126), Expect = 6e-08
 Identities = 20/42 (47%), Positives = 32/42 (76%)
 Frame = +1

Query: 106 VLDRRIKNGVLEYYLKWKGYSDEDNTWEPEDNLDCPDLIQAF 231
           +L  R+++G + Y++KWKGYS   NTWEPE+N+  P L++A+
Sbjct: 30  ILKERVRDGKVWYFIKWKGYSQRYNTWEPEENVLDPRLLKAY 71


>SB_26989| Best HMM Match : Chromo (HMM E-Value=5.5e-10)
          Length = 517

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 16/37 (43%), Positives = 30/37 (81%), Gaps = 1/37 (2%)
 Frame = +1

Query: 124 KNGVLEYYLKWKGYSDEDNTWEPEDNL-DCPDLIQAF 231
           ++GV  + ++WKGY+ +D+TWEPE+N+ +C D+++ F
Sbjct: 13  QDGVRYFKVRWKGYTPDDDTWEPEENVFECEDVLEEF 49


>SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2541

 Score = 35.1 bits (77), Expect = 0.049
 Identities = 30/127 (23%), Positives = 60/127 (47%), Gaps = 5/127 (3%)
 Frame = +1

Query: 106 VLDRRI-KNGVLEYYLKWKGYSDEDNTWEPEDNL-DCPDLIQAFXXXXXXXXXXXXCQKL 279
           ++ RRI ++G  EY + WK Y   ++TWEP +NL  C   +  F             + L
Sbjct: 27  IIGRRITQSGKEEYLVHWKKYKVWESTWEPLENLRPCLANVAEFIHKAYPIPGLYASEIL 86

Query: 280 ---IRIQRSVNQPQPHLISKVQRKPKVMTRKHLVLIVD*NQKK*LALRIVVVNSCSS*NG 450
               ++   ++QP+   I++V +K K+    H  ++ +  ++K   + +    S  S  G
Sbjct: 87  HLKPKLGGHLSQPKLKKITQVNKK-KLRATHHKAILDEIMKEKAKEIDVKKERSTISRRG 145

Query: 451 KEQMKQI 471
           K++  ++
Sbjct: 146 KKREPEV 152


>SB_23869| Best HMM Match : rve (HMM E-Value=2.2e-16)
          Length = 1456

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 124  KNGVLEYYLKWKGYSDEDNTWEP 192
            + G  EY++ WKG+ D+ N+W P
Sbjct: 1238 RGGRGEYWVHWKGWPDKYNSWVP 1260


>SB_4658| Best HMM Match : HTH_psq (HMM E-Value=0)
          Length = 1595

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = -1

Query: 523 KLNNYCGHRTLACFAGTRSASSVPCHFMRNMSSPLLSVAPIIFSGSNPRS 374
           K+ +Y    +L     +++ SSV  H   NMS  LL+V+P     + P+S
Sbjct: 431 KVKDYISDESLTDLDNSQNKSSVTVHGDLNMSDNLLAVSPPPSKEAEPKS 480


>SB_51384| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 429

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +1

Query: 130 GVLEYYLKWKGYSDEDNTWEP 192
           G  +Y++ WKG+ ++ N+W P
Sbjct: 100 GARKYWVHWKGWPNKYNSWVP 120


>SB_28997| Best HMM Match : rve (HMM E-Value=2.3e-10)
          Length = 1847

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 106  VLDRRIKNGVLEYYLKWKGYSDEDNTWEP 192
            V+  R + G   Y++ WKG+ D+  +W P
Sbjct: 1081 VVKTRKRGGRKVYWVHWKGWPDKYKSWVP 1109


>SB_21158| Best HMM Match : Chromo (HMM E-Value=0.00035)
          Length = 132

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = +1

Query: 106 VLDRRI--KNGVLEYYLKWKGYSDEDNTWEPEDNL 204
           ++ +RI  +NG  EY +KWK +    +T EP ++L
Sbjct: 46  IISQRITSRNGDKEYLVKWKNWPIWTSTLEPANHL 80


>SB_58697| Best HMM Match : Chromo (HMM E-Value=5.5e-09)
          Length = 590

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 106 VLDRRIKNGVLEYYLKWKGYSDEDNTWEPEDNL 204
           +L+ R ++   EY + W   SD+  TWEP  N+
Sbjct: 406 LLNCRRRSKTTEYLVLW---SDDSQTWEPRHNI 435


>SB_47174| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1198

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 106  VLDRRIKNGVLEYYLKWKGYSDEDNTWEPEDNL 204
            +L+ R ++   EY + W   SD+  TWEP  N+
Sbjct: 975  LLNCRRRSKTTEYLVLW---SDDSQTWEPRHNI 1004


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,708,337
Number of Sequences: 59808
Number of extensions: 304915
Number of successful extensions: 759
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)