Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0129
(646 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L13200-3|AAA28192.1| 304|Caenorhabditis elegans C.elegans chrom... 52 3e-07
Z70210-6|CAA94152.1| 184|Caenorhabditis elegans Hypothetical pr... 51 6e-07
AF056580-1|AAC78602.1| 184|Caenorhabditis elegans heterochromat... 51 6e-07
Z92803-4|CAB54267.2| 303|Caenorhabditis elegans Hypothetical pr... 46 2e-05
Z92803-3|CAB07243.2| 301|Caenorhabditis elegans Hypothetical pr... 46 2e-05
Z92803-2|CAB07241.1| 175|Caenorhabditis elegans Hypothetical pr... 46 2e-05
AF123574-1|AAD21197.1| 175|Caenorhabditis elegans chromo-domain... 46 2e-05
AF123573-1|AAD21196.1| 301|Caenorhabditis elegans chromo-domain... 46 2e-05
U61944-4|AAB03120.1| 891|Caenorhabditis elegans Hypothetical pr... 38 0.006
Z36753-7|CAA85339.1| 339|Caenorhabditis elegans Hypothetical pr... 36 0.019
U23169-4|AAC46697.1| 706|Caenorhabditis elegans Hypothetical pr... 34 0.075
Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical pr... 31 0.53
Z93387-6|CAI79181.1| 331|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z74035-6|CAI79230.1| 331|Caenorhabditis elegans Hypothetical pr... 29 3.7
U41992-6|AAA83357.1| 270|Caenorhabditis elegans Hypothetical pr... 29 3.7
AL132859-6|CAB60493.3| 324|Caenorhabditis elegans Hypothetical ... 28 4.9
Z81128-1|CAB03398.1| 568|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z72511-4|CAA96660.1| 395|Caenorhabditis elegans Hypothetical pr... 28 6.5
AF013953-1|AAC47750.1| 568|Caenorhabditis elegans mom-5 protein. 28 6.5
AF125442-4|AAD12794.1| 317|Caenorhabditis elegans Serpentine re... 27 8.6
>L13200-3|AAA28192.1| 304|Caenorhabditis elegans C.elegans
chromodomain proteinprotein 1 protein.
Length = 304
Score = 52.4 bits (120), Expect = 3e-07
Identities = 20/42 (47%), Positives = 29/42 (69%)
Frame = +1
Query: 106 VLDRRIKNGVLEYYLKWKGYSDEDNTWEPEDNLDCPDLIQAF 231
+L+ R K G E+Y+KW GY N+WEP++N+ P LI+AF
Sbjct: 13 ILEHRKKKGKSEFYIKWLGYDHTHNSWEPKENIVDPTLIEAF 54
>Z70210-6|CAA94152.1| 184|Caenorhabditis elegans Hypothetical
protein K08H2.6 protein.
Length = 184
Score = 51.2 bits (117), Expect = 6e-07
Identities = 18/42 (42%), Positives = 30/42 (71%)
Frame = +1
Query: 106 VLDRRIKNGVLEYYLKWKGYSDEDNTWEPEDNLDCPDLIQAF 231
VL++R+ G EYY+KW+G+ + + +WEP +NL C +IQ +
Sbjct: 42 VLNKRLTRGGSEYYIKWQGFPESECSWEPIENLQCDRMIQEY 83
Score = 37.1 bits (82), Expect = 0.011
Identities = 19/42 (45%), Positives = 25/42 (59%)
Frame = +3
Query: 399 IIGATDSSGELMFLMKWQGTDEADLVPAKQANVRCPQ*LFNF 524
IIG T + GEL FL K+ D L+P ++ANVR P + F
Sbjct: 125 IIGITKAPGELHFLCKFSD-DSVHLIPLREANVRFPSQVIKF 165
>AF056580-1|AAC78602.1| 184|Caenorhabditis elegans heterochromatin
protein 1 homolog protein.
Length = 184
Score = 51.2 bits (117), Expect = 6e-07
Identities = 18/42 (42%), Positives = 30/42 (71%)
Frame = +1
Query: 106 VLDRRIKNGVLEYYLKWKGYSDEDNTWEPEDNLDCPDLIQAF 231
VL++R+ G EYY+KW+G+ + + +WEP +NL C +IQ +
Sbjct: 42 VLNKRLTRGGSEYYIKWQGFPESECSWEPIENLQCDRMIQEY 83
Score = 37.1 bits (82), Expect = 0.011
Identities = 19/42 (45%), Positives = 25/42 (59%)
Frame = +3
Query: 399 IIGATDSSGELMFLMKWQGTDEADLVPAKQANVRCPQ*LFNF 524
IIG T + GEL FL K+ D L+P ++ANVR P + F
Sbjct: 125 IIGITKAPGELHFLCKFSD-DSVHLIPLREANVRFPSQVIKF 165
>Z92803-4|CAB54267.2| 303|Caenorhabditis elegans Hypothetical
protein K01G5.2c protein.
Length = 303
Score = 46.0 bits (104), Expect = 2e-05
Identities = 17/43 (39%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Frame = +1
Query: 106 VLDRRI-KNGVLEYYLKWKGYSDEDNTWEPEDNLDCPDLIQAF 231
VLD+R K G E+ ++W+G+ + D++WEP +NL C +++ F
Sbjct: 24 VLDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCVEMLDEF 66
Score = 32.7 bits (71), Expect = 0.23
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = +3
Query: 381 GLEPEKIIGATDSSGELMFLMKWQGTDEADLVPAKQANVR 500
G + + I+G T GEL FL K+ D A L+PAK+ N R
Sbjct: 114 GKQLKCIVGLTKGPGELHFLCKF-SDDTARLLPAKEVNSR 152
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +3
Query: 393 EKIIGA-TDSSGELMFLMKWQGTDEADLVPAKQANVRCPQ*LFNFMKKGS 539
EK++ T +G FL++WQG E+D + N++C + L F ++ S
Sbjct: 22 EKVLDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCVEMLDEFEREFS 71
>Z92803-3|CAB07243.2| 301|Caenorhabditis elegans Hypothetical
protein K01G5.2b protein.
Length = 301
Score = 46.0 bits (104), Expect = 2e-05
Identities = 17/43 (39%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Frame = +1
Query: 106 VLDRRI-KNGVLEYYLKWKGYSDEDNTWEPEDNLDCPDLIQAF 231
VLD+R K G E+ ++W+G+ + D++WEP +NL C +++ F
Sbjct: 24 VLDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCVEMLDEF 66
Score = 32.7 bits (71), Expect = 0.23
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = +3
Query: 381 GLEPEKIIGATDSSGELMFLMKWQGTDEADLVPAKQANVR 500
G + + I+G T GEL FL K+ D A L+PAK+ N R
Sbjct: 114 GKQLKCIVGLTKGPGELHFLCKF-SDDTARLLPAKEVNSR 152
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +3
Query: 393 EKIIGA-TDSSGELMFLMKWQGTDEADLVPAKQANVRCPQ*LFNFMKKGS 539
EK++ T +G FL++WQG E+D + N++C + L F ++ S
Sbjct: 22 EKVLDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCVEMLDEFEREFS 71
>Z92803-2|CAB07241.1| 175|Caenorhabditis elegans Hypothetical
protein K01G5.2a protein.
Length = 175
Score = 46.0 bits (104), Expect = 2e-05
Identities = 17/43 (39%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Frame = +1
Query: 106 VLDRRI-KNGVLEYYLKWKGYSDEDNTWEPEDNLDCPDLIQAF 231
VLD+R K G E+ ++W+G+ + D++WEP +NL C +++ F
Sbjct: 24 VLDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCVEMLDEF 66
Score = 34.7 bits (76), Expect = 0.057
Identities = 19/42 (45%), Positives = 25/42 (59%)
Frame = +3
Query: 381 GLEPEKIIGATDSSGELMFLMKWQGTDEADLVPAKQANVRCP 506
G + + I+G T GEL FL K+ D A L+PAK+ N R P
Sbjct: 114 GKQLKCIVGLTKGPGELHFLCKF-SDDTARLLPAKEVNSRYP 154
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +3
Query: 393 EKIIGA-TDSSGELMFLMKWQGTDEADLVPAKQANVRCPQ*LFNFMKKGS 539
EK++ T +G FL++WQG E+D + N++C + L F ++ S
Sbjct: 22 EKVLDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCVEMLDEFEREFS 71
>AF123574-1|AAD21197.1| 175|Caenorhabditis elegans chromo-domain
protein protein.
Length = 175
Score = 46.0 bits (104), Expect = 2e-05
Identities = 17/43 (39%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Frame = +1
Query: 106 VLDRRI-KNGVLEYYLKWKGYSDEDNTWEPEDNLDCPDLIQAF 231
VLD+R K G E+ ++W+G+ + D++WEP +NL C +++ F
Sbjct: 24 VLDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCVEMLDEF 66
Score = 34.7 bits (76), Expect = 0.057
Identities = 19/42 (45%), Positives = 25/42 (59%)
Frame = +3
Query: 381 GLEPEKIIGATDSSGELMFLMKWQGTDEADLVPAKQANVRCP 506
G + + I+G T GEL FL K+ D A L+PAK+ N R P
Sbjct: 114 GKQLKCIVGLTKGPGELHFLCKF-SDDTARLLPAKEVNSRYP 154
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +3
Query: 393 EKIIGA-TDSSGELMFLMKWQGTDEADLVPAKQANVRCPQ*LFNFMKKGS 539
EK++ T +G FL++WQG E+D + N++C + L F ++ S
Sbjct: 22 EKVLDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCVEMLDEFEREFS 71
>AF123573-1|AAD21196.1| 301|Caenorhabditis elegans chromo-domain
protein protein.
Length = 301
Score = 46.0 bits (104), Expect = 2e-05
Identities = 17/43 (39%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Frame = +1
Query: 106 VLDRRI-KNGVLEYYLKWKGYSDEDNTWEPEDNLDCPDLIQAF 231
VLD+R K G E+ ++W+G+ + D++WEP +NL C +++ F
Sbjct: 24 VLDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCVEMLDEF 66
Score = 32.7 bits (71), Expect = 0.23
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = +3
Query: 381 GLEPEKIIGATDSSGELMFLMKWQGTDEADLVPAKQANVR 500
G + + I+G T GEL FL K+ D A L+PAK+ N R
Sbjct: 114 GKQLKCIVGLTKGPGELHFLCKF-SDDTARLLPAKEVNSR 152
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +3
Query: 393 EKIIGA-TDSSGELMFLMKWQGTDEADLVPAKQANVRCPQ*LFNFMKKGS 539
EK++ T +G FL++WQG E+D + N++C + L F ++ S
Sbjct: 22 EKVLDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCVEMLDEFEREFS 71
>U61944-4|AAB03120.1| 891|Caenorhabditis elegans Hypothetical
protein T12E12.2 protein.
Length = 891
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/40 (37%), Positives = 26/40 (65%)
Frame = +1
Query: 112 DRRIKNGVLEYYLKWKGYSDEDNTWEPEDNLDCPDLIQAF 231
D+R ++ Y + W+GY ++ TWEPE+NL+ + +Q F
Sbjct: 42 DKR-RHSKYAYLVHWRGYDWKERTWEPEENLENCEELQKF 80
>Z36753-7|CAA85339.1| 339|Caenorhabditis elegans Hypothetical
protein T09A5.8 protein.
Length = 339
Score = 36.3 bits (80), Expect = 0.019
Identities = 13/42 (30%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = +1
Query: 106 VLDRRIKNGVLEYYLKWKGYSDEDNTWEPEDNL-DCPDLIQA 228
+L ++ + +L ++W GY +++TWEPE++L +C + A
Sbjct: 29 ILAHKVTDNLLVLQVRWLGYGADEDTWEPEEDLQECASEVVA 70
>U23169-4|AAC46697.1| 706|Caenorhabditis elegans Hypothetical
protein C29H12.5 protein.
Length = 706
Score = 34.3 bits (75), Expect = 0.075
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +1
Query: 142 YYLKWKGYSDEDNTWEPEDNLDCPDLIQAF 231
+ +KW GY +++ TWEPE N+ PD + +
Sbjct: 95 FLVKWLGYGNKEMTWEPESNI--PDSVYLY 122
>Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical
protein H06O01.2 protein.
Length = 1461
Score = 31.5 bits (68), Expect = 0.53
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +1
Query: 139 EYYLKWKGYSDEDNTWEPEDNL 204
++++KW G+S NTWE E++L
Sbjct: 238 QFFVKWTGWSHLHNTWESENSL 259
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 139 EYYLKWKGYSDEDNTWEPEDNLDCPDLIQAF 231
EY +KW G D TWE ++ + P+ I+A+
Sbjct: 333 EYLIKWSGLPYSDCTWE-DEKMVAPEQIKAY 362
>Z93387-6|CAI79181.1| 331|Caenorhabditis elegans Hypothetical
protein T02E9.6 protein.
Length = 331
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = -1
Query: 529 FIKLNNYCGHRTLACFAGTRSASSVPCHFMRNMSSPLL--SVAPIIFSGSNPR 377
F+KL+N CG R AG + +N + LL S+A IF + P+
Sbjct: 215 FVKLDNICGERWAVYSAGDKVERKYGLLVSKNPGANLLAYSIAGYIFKENRPK 267
>Z74035-6|CAI79230.1| 331|Caenorhabditis elegans Hypothetical
protein T02E9.6 protein.
Length = 331
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = -1
Query: 529 FIKLNNYCGHRTLACFAGTRSASSVPCHFMRNMSSPLL--SVAPIIFSGSNPR 377
F+KL+N CG R AG + +N + LL S+A IF + P+
Sbjct: 215 FVKLDNICGERWAVYSAGDKVERKYGLLVSKNPGANLLAYSIAGYIFKENRPK 267
>U41992-6|AAA83357.1| 270|Caenorhabditis elegans Hypothetical
protein F32E10.2 protein.
Length = 270
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +1
Query: 115 RRIKNGVLEYYLKWKGYSD---EDNTWEPEDNLDCPDLIQAF 231
R++K L Y ++WKGY WE ED +C DL+ A+
Sbjct: 96 RKVKGSPL-YLVQWKGYPHPVWNSEMWE-EDLDNCKDLLAAY 135
>AL132859-6|CAB60493.3| 324|Caenorhabditis elegans Hypothetical
protein Y39C12A.7 protein.
Length = 324
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -2
Query: 222 YKIWTIKIILWFPCIIFITVSFPFQVIFQNTILNAPVQNFFNRK 91
+ I+ I II C F T +PF V+F + I++ + N N K
Sbjct: 123 FLIYLISIISVLVCTQFSTTFYPFLVLFMSNIISY-IVNIINYK 165
>Z81128-1|CAB03398.1| 568|Caenorhabditis elegans Hypothetical
protein T23D8.1 protein.
Length = 568
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = -1
Query: 250 SSFLLLQRLV*DLDNQDYPLVPMYYLHHCILSISS 146
S F L+ LV DL YP+ P+ YL C L+IS+
Sbjct: 242 SLFTLVTFLV-DLSRFAYPVRPILYLAFCYLAIST 275
>Z72511-4|CAA96660.1| 395|Caenorhabditis elegans Hypothetical
protein F55A11.7 protein.
Length = 395
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -3
Query: 476 YKICFICSLPFHEEHEFTTTIRSANYFFWF 387
+ I F SL FHE EF T + S FF+F
Sbjct: 246 FGIAFHGSLIFHETVEFATIVLSVLAFFFF 275
>AF013953-1|AAC47750.1| 568|Caenorhabditis elegans mom-5 protein.
Length = 568
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = -1
Query: 250 SSFLLLQRLV*DLDNQDYPLVPMYYLHHCILSISS 146
S F L+ LV DL YP+ P+ YL C L+IS+
Sbjct: 242 SLFTLVTFLV-DLSRFAYPVRPILYLAFCYLAIST 275
>AF125442-4|AAD12794.1| 317|Caenorhabditis elegans Serpentine
receptor, class v protein21 protein.
Length = 317
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -2
Query: 243 SCFFKGLYKIWTIKIILWFPCIIFITVSF 157
S F K W + +I WFP +IF + +
Sbjct: 135 STLFMQSLKPWKVVLIYWFPPVIFCVIFY 163
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,751,693
Number of Sequences: 27780
Number of extensions: 248422
Number of successful extensions: 719
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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