Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0129
         (646 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g17690.1 68418.m02073 like heterochromatin protein (LHP1) ide...    45   4e-05
At4g19020.1 68417.m02803 chromomethylase 2 (CMT2) nearly identic...    38   0.006
At2g47450.1 68415.m05922 chloroplast signal recognition particle...    33   0.16 
At1g80740.1 68414.m09473 chromomethylase 1 (CMT1) identical to c...    31   0.50 
At1g69770.1 68414.m08028 chromomethylase 3 (CMT3) nearly identic...    29   2.6  
At4g01870.1 68417.m00245 tolB protein-related contains weak simi...    28   4.6  
At2g13370.1 68415.m01476 chromodomain-helicase-DNA-binding famil...    28   4.6  
At3g56930.1 68416.m06332 zinc finger (DHHC type) family protein ...    28   6.1  
At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKL...    27   8.1  

>At5g17690.1 68418.m02073 like heterochromatin protein (LHP1)
           identical to like heterochromatin protein LHP1
           [Arabidopsis thaliana] GI:15625407; contains Pfam
           profile PF00385: 'chromo' (CHRromatin Organization
           MOdifier)
          Length = 445

 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 17/40 (42%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
 Frame = +1

Query: 115 RRIKNGVLEYYLKWKGYSDEDNTWEPEDNL-DCPDLIQAF 231
           +R++ G ++Y +KW+G+ +  NTWEP +NL    D+I AF
Sbjct: 116 KRVRKGKVQYLIKWRGWPETANTWEPLENLQSIADVIDAF 155


>At4g19020.1 68417.m02803 chromomethylase 2 (CMT2) nearly identical
           to chromomethylase CMT2 [Arabidopsis thaliana]
           GI:14583094
          Length = 1295

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
 Frame = +1

Query: 112 DRRIKNGVLEYYLKWKGYSDEDNTWEPEDNL-DCPDLIQAF 231
           D+  KNG L++ + WKGY  +++TWE  + L +C D I+ F
Sbjct: 851 DKTGKNG-LKFKVHWKGYRSDEDTWELAEELSNCQDAIREF 890


>At2g47450.1 68415.m05922 chloroplast signal recognition particle
           component (CAO) nearly identical to CAO [Arabidopsis
           thaliana] GI:4102582
          Length = 373

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +1

Query: 136 LEYYLKWKGYSDEDNTWEPEDNLD 207
           +EY +KW   SD   TWEP+DN+D
Sbjct: 337 IEYLVKWTDMSDA--TWEPQDNVD 358


>At1g80740.1 68414.m09473 chromomethylase 1 (CMT1) identical to
           chromomethylase GB:AAC02660 GI:2865416 from [Arabidopsis
           thaliana]
          Length = 791

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +1

Query: 136 LEYYLKWKGYSDEDNTWEPEDNL-DCPDLIQAF 231
           L+  ++WKGY+   +TWEP   L +C + ++ +
Sbjct: 360 LQLMVRWKGYNSSYDTWEPYSGLGNCKEKLKEY 392


>At1g69770.1 68414.m08028 chromomethylase 3 (CMT3) nearly identical
           to chromomethylase CMT3 [Arabidopsis thaliana]
           GI:14583092, GI:14647157
          Length = 839

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 121 IKNGVLEYYLKWKGYSDEDNTWEPEDNL-DCPDLIQAF 231
           +K G L   ++W  Y D  +TWEP + L +C   I+ F
Sbjct: 399 LKRG-LYLKVRWLNYDDSHDTWEPIEGLSNCRGKIEEF 435


>At4g01870.1 68417.m00245 tolB protein-related contains weak
           similarity to TolB protein precursor (Swiss-Prot:P44677)
           [Haemophilus influenzae]
          Length = 652

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +1

Query: 148 LKWKGYSDEDNTWEPEDNLDCPDL 219
           L W GY D   TW   D LD   L
Sbjct: 605 LTWNGYEDGTPTWHTADELDLSQL 628


>At2g13370.1 68415.m01476 chromodomain-helicase-DNA-binding family
           protein / CHD family protein similar to SP|O14647
           Chromodomain-helicase-DNA-binding protein 2 (CHD-2)
           {Homo sapiens}; contains Pfam profiles PF00271: Helicase
           conserved C-terminal domain, PF00176: SNF2 family
           N-terminal domain, PF00385: 'chromo' (CHRromatin
           Organization MOdifier)
          Length = 1722

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
 Frame = +1

Query: 106 VLDRRIKNG----VLEYYLKWKGYSDEDNTWEPE 195
           + DR  K+G    V EY +KW+G S  + TWE +
Sbjct: 539 IADRISKDGLGDVVPEYLVKWQGLSYAEATWEKD 572


>At3g56930.1 68416.m06332 zinc finger (DHHC type) family protein low
           similarity to Golgi-specific DHHC zinc figer protein
           [Mus musculus] GI:21728103; contains Pfam profile
           PF01529: DHHC zinc finger domain
          Length = 477

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 416 IRSANYFFWF*STIKTRCFLVITFGFLCTFE 324
           +R+  +FF F ST  T C  V  F +L  F+
Sbjct: 185 VRNYRFFFMFISTSTTLCIYVFAFSWLNIFQ 215


>At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKLE)
           identical to chromatin remodeling factor CHD3
           [Arabidopsis thaliana] GI:6478518
          Length = 1384

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +1

Query: 106 VLDRRIKNGVLEYYLKWKGYSDEDNTWEPEDNL 204
           +L  R ++G LEY +K+K  S ++  WE E ++
Sbjct: 195 ILACREEDGELEYLVKYKELSYDECYWESESDI 227


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,895,861
Number of Sequences: 28952
Number of extensions: 222632
Number of successful extensions: 527
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)