Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0128
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomy...   125   7e-30
SPBC17D1.02 |||diphthamide biosynthesis protein |Schizosaccharom...    61   2e-10
SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         26   4.4  

>SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 436

 Score =  125 bits (301), Expect = 7e-30
 Identities = 56/82 (68%), Positives = 65/82 (79%)
 Frame = +2

Query: 263 LCDIIETFTEADTVIMGDVTYGACCIDDFTAVALGVDLLVHYGHSCLIPIDQTSSIKVLY 442
           L DI E F + +T++MGDVTYGACCIDDFTA AL  D LVHYGHSCLIP+DQT  IKVLY
Sbjct: 107 LSDIFEQFCQVETIVMGDVTYGACCIDDFTARALDCDFLVHYGHSCLIPVDQT-PIKVLY 165

Query: 443 IFVDIKIDPSHFIETIKVNFPS 508
           +FVDIKID  H + ++K N PS
Sbjct: 166 VFVDIKIDLQHVVSSLKHNLPS 187



 Score = 64.9 bits (151), Expect = 1e-11
 Identities = 29/39 (74%), Positives = 31/39 (79%)
 Frame = +3

Query: 138 ACAALPENYNFEIHKTIWRIRSTAAKRVALQMPEGLTMF 254
           A   LP+NYNFEIHKTIW IR   AKRVALQ+PEGL MF
Sbjct: 65  AIKLLPQNYNFEIHKTIWHIRLRKAKRVALQLPEGLLMF 103



 Score = 56.8 bits (131), Expect = 3e-09
 Identities = 30/61 (49%), Positives = 40/61 (65%), Gaps = 6/61 (9%)
 Frame = +1

Query: 490 KSKLSI*THLALVSTIQFVTTLHSVAKNLRIEE------YMVTVPQTKPLSPGEILGCTA 651
           K  L   + LALV TIQFV +L+S+   L+I++      + V +PQ KPLSPGE LGCT+
Sbjct: 182 KHNLPSNSRLALVGTIQFVGSLNSIKDALQIQDEDGKGGFYVVIPQAKPLSPGEALGCTS 241

Query: 652 P 654
           P
Sbjct: 242 P 242


>SPBC17D1.02 |||diphthamide biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 503

 Score = 60.9 bits (141), Expect = 2e-10
 Identities = 27/71 (38%), Positives = 41/71 (57%)
 Frame = +2

Query: 254 STTLCDIIETFTEADTVIMGDVTYGACCIDDFTAVALGVDLLVHYGHSCLIPIDQTSSIK 433
           S  +  I+    EA+  I+ D  YG+CC+D+  A  +  D +VHYG +CL P   TS + 
Sbjct: 66  SGKVASILTNLVEANVQILADTNYGSCCVDEVAAEHMSADAIVHYGRACLSP---TSRLP 122

Query: 434 VLYIFVDIKID 466
           VLY+F  + I+
Sbjct: 123 VLYVFGRLPIN 133


>SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 128

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
 Frame = -1

Query: 454 IHKYVQNLNTTSLIYGN*ARVS-----IVHKEVYTECHSSEVIYTAGSVCHISHYHSIGF 290
           IH YV+      L YG   RV+     I+H+ +Y       + Y    VC++ +Y+   F
Sbjct: 6   IHLYVKK----DLTYGECVRVAKEKYKIIHRLLYISIIFLFLNYVVDIVCYVKNYNGFSF 61

Query: 289 GECFYYVTEG 260
             C+ ++  G
Sbjct: 62  -FCWVFLNLG 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,874,044
Number of Sequences: 5004
Number of extensions: 59891
Number of successful extensions: 127
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)