Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0128
         (685 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1210 - 34954006-34955412                                         85   5e-17
11_03_0017 + 8990852-8990938,8991056-8991243,8991687-8991795,899...    48   7e-06
01_07_0229 + 42161770-42164562                                         28   6.0  
06_03_1336 - 29424470-29424897,29425243-29429653                       28   7.9  
06_03_0545 + 21983666-21986086                                         28   7.9  
01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,286...    28   7.9  

>02_05_1210 - 34954006-34955412
          Length = 468

 Score = 85.0 bits (201), Expect = 5e-17
 Identities = 37/85 (43%), Positives = 54/85 (63%)
 Frame = +2

Query: 251 VSTTLCDIIETFTEADTVIMGDVTYGACCIDDFTAVALGVDLLVHYGHSCLIPIDQTSSI 430
           +S  L   +E     D +I+ D TYGACC+ D  A AL  D+LVHYGHSCL+P+  +S +
Sbjct: 92  LSHLLAPFLEPDPSNDVLILADPTYGACCLADRPAKALAADVLVHYGHSCLVPV-TSSLL 150

Query: 431 KVLYIFVDIKIDPSHFIETIKVNFP 505
            VLY+FV+I++D     + ++  FP
Sbjct: 151 PVLYVFVEIRVDAQRLADAVRAAFP 175



 Score = 54.8 bits (126), Expect = 6e-08
 Identities = 24/49 (48%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
 Frame = +1

Query: 517 LALVSTIQFVTTLHSVAKNLRIEEYM-VTVPQTKPLSPGEILGCTAPKL 660
           LA+  T+QF++ +H+  + L  + Y  + VPQ KPLS GE+LGCTAP L
Sbjct: 183 LAIAGTVQFISAVHAAREILSHDGYQGIVVPQAKPLSAGEVLGCTAPAL 231



 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 24/42 (57%), Positives = 29/42 (69%)
 Frame = +3

Query: 138 ACAALPENYNFEIHKTIWRIRSTAAKRVALQMPEGLTMFQRP 263
           A   LP  YNFE+ KT  RIRS+ A+R ALQ+PEGL +F  P
Sbjct: 50  ATGLLPAAYNFELPKTAHRIRSSGARRTALQLPEGLLLFSLP 91


>11_03_0017 +
           8990852-8990938,8991056-8991243,8991687-8991795,
           8992448-8992832,8993240-8993309,8993410-8993477,
           8995009-8995124,8995211-8995317,8995488-8995627,
           8995794-8996044
          Length = 506

 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 18/54 (33%), Positives = 31/54 (57%)
 Frame = +2

Query: 305 IMGDVTYGACCIDDFTAVALGVDLLVHYGHSCLIPIDQTSSIKVLYIFVDIKID 466
           +M D  Y +CC+D+  A  +    +VHYGH+C+ P   TS++   ++F    +D
Sbjct: 58  VMADTAYNSCCVDEVGASHIDAQCVVHYGHACMSP---TSNLPAFFVFGKTPLD 108


>01_07_0229 + 42161770-42164562
          Length = 930

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = -3

Query: 410 WELGKSVHSAQGGLHRVPQQ*--SHLYSRLRMSHLPLSQYRLR*MFLLC 270
           W L  S +  +  +H +P     SH+Y+RL++S+  L   +++  FL C
Sbjct: 332 WALALS-YLKKSRIHEIPNMGNTSHIYTRLKLSYDYLQDKQIKYCFLCC 379


>06_03_1336 - 29424470-29424897,29425243-29429653
          Length = 1612

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 290 EADTVIMGDVTYGACCIDDFTAVAL 364
           E D +I  D+T+G CC+ D T + +
Sbjct: 267 EKDRIIK-DITHGDCCVKDLTVIPI 290


>06_03_0545 + 21983666-21986086
          Length = 806

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +1

Query: 514 HLALVSTIQFVTTLHSVAKNLRIEEY-MVTVPQTKPLSPGEILGCTAPK 657
           H+    T+     +  V + L++ E+ M ++PQ++P  P     C A K
Sbjct: 392 HIGSTGTMYLKLPMEEVLEELQLSEHSMTSIPQSQPFGPKYGPDCNANK 440


>01_01_0365 -
           2859617-2859722,2860047-2860489,2862232-2862391,
           2863431-2863516,2863648-2866272
          Length = 1139

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +2

Query: 341 DDFTAVALGVDLLVHYGHSCLIPIDQTSSIKVLYIFVDIKIDPSH 475
           D + A+  G+ L++HY  SC     Q   I V Y  +D   + SH
Sbjct: 863 DTYRALLSGISLMLHYDFSCFRGTKQYIQISV-YELMDSTHNKSH 906


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,829,912
Number of Sequences: 37544
Number of extensions: 360993
Number of successful extensions: 683
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)