Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0128
         (685 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37985| Best HMM Match : No HMM Matches (HMM E-Value=.)              56   4e-08
SB_33593| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.66 
SB_58243| Best HMM Match : DUF584 (HMM E-Value=1.5)                    30   2.0  
SB_24073| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_37670| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_37985| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 586

 Score = 55.6 bits (128), Expect = 4e-08
 Identities = 23/65 (35%), Positives = 37/65 (56%)
 Frame = +2

Query: 254 STTLCDIIETFTEADTVIMGDVTYGACCIDDFTAVALGVDLLVHYGHSCLIPIDQTSSIK 433
           S ++  +IE        I+ D +YG+CC+D+  A     +L++HYG +CL    QT  + 
Sbjct: 81  SASVARLIEQRASCKAFILADTSYGSCCVDEIAAEHADAELIIHYGQACL---SQTKRLP 137

Query: 434 VLYIF 448
           VLY+F
Sbjct: 138 VLYVF 142


>SB_33593| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 333

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
 Frame = -2

Query: 357 TAVKSSIQQAPYVTSPIITVSASVNVSIMSQRVVET*L--DLQASVGPRVLPL*TVFSIS 184
           T V +S++ AP   S   TV+ S+++++       T L  D+Q  +G   +P+  V S  
Sbjct: 170 TIVINSLELAPDPVSMPGTVNVSLSLTVKRHLPSSTKLRLDVQKQIGSAWIPIPCVASYG 229

Query: 183 SCVFRNYNFLVK 148
           SC + N+  L++
Sbjct: 230 SCTYDNFCNLLR 241


>SB_58243| Best HMM Match : DUF584 (HMM E-Value=1.5)
          Length = 1308

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 149 FTRKL*FRNTQDDMENTVYSGKTRGPTDA*RSNY 250
           F R L   N Q++MENT+YS    G T   R+ +
Sbjct: 573 FNRPLSIVNEQEEMENTLYSNSEGGETSNKRNGF 606


>SB_24073| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 794

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
 Frame = +1

Query: 187 YGEYGLQRQNAWPYRCLKV*LCFNDPL*HNRNIHRSRYCDN---GRCDIRSLL 336
           Y EYGL +       C+K   C  DP   N N H  R C+    G C  R L+
Sbjct: 260 YFEYGLNKD------CVKCSPCCGDPTVFNANEHLIRKCEKDGMGHCSCRPLI 306


>SB_37670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1039

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 541 FVTTLHSVAKNLRIEEYMVTVPQTKPLSPGEILGCT 648
           FV  ++S+ +   + E  + VP T P  P   L CT
Sbjct: 763 FVAAIYSLLELCSLTELSINVPDTHPCEPKVELDCT 798


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,477,060
Number of Sequences: 59808
Number of extensions: 447713
Number of successful extensions: 954
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)