Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0128
         (685 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           23   2.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.7  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    21   8.3  

>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 148 AAQALFSRGSFNKSSGILFKDLTLGLKVFL 59
           A + L  RG   + SG+++++    LKVFL
Sbjct: 34  AIRRLARRGGVKRISGLIYEETRGVLKVFL 63


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 139 ALFSRGSFNKSSGILFKDLTLGLKVFLCPS 50
           AL + GS+NK +  ++KD  +   V  C S
Sbjct: 297 ALVALGSYNKFNNNVYKDALIVCTVNSCTS 326


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 139 ALFSRGSFNKSSGILFKDLTLGLKVFLCPS 50
           AL + GS+NK +  ++KD  +   V  C S
Sbjct: 350 ALVALGSYNKFNNNVYKDALIVCTVNSCTS 379


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -3

Query: 68  SFSLSFRFRTYNNYTRIIGKIF 3
           S S ++++  YNNY     K++
Sbjct: 84  SLSNNYKYSNYNNYNNYNKKLY 105


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,145
Number of Sequences: 438
Number of extensions: 4373
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)