Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0128
         (685 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g62030.1 68418.m07786 diphthamide synthesis DPH2 family prote...   103   8e-23
At3g59630.1 68416.m06653 diphthamide synthesis DPH2 family prote...    53   2e-07
At3g17360.1 68416.m02218 kinesin motor protein-related similar t...    28   5.0  
At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein...    27   8.8  

>At5g62030.1 68418.m07786 diphthamide synthesis DPH2 family protein 
           contains InterPro accession IPR002728: Diphthamide
           synthesis DPH2 protein
          Length = 453

 Score =  103 bits (248), Expect = 8e-23
 Identities = 48/84 (57%), Positives = 60/84 (71%), Gaps = 1/84 (1%)
 Frame = +2

Query: 260 TLCDIIETFTEAD-TVIMGDVTYGACCIDDFTAVALGVDLLVHYGHSCLIPIDQTSSIKV 436
           TL DI  +F  A    ++GDVTYGACC+DDF+A ALG DLL+HYGHSCL+PID T  I  
Sbjct: 80  TLSDIFTSFAGASHCFVLGDVTYGACCVDDFSACALGADLLIHYGHSCLVPIDST-KIPC 138

Query: 437 LYIFVDIKIDPSHFIETIKVNFPS 508
           LY+FV+I+ID    + TI +N  S
Sbjct: 139 LYVFVEIQIDVKCLLNTIHLNLAS 162



 Score = 57.2 bits (132), Expect = 9e-09
 Identities = 26/60 (43%), Positives = 37/60 (61%)
 Frame = +3

Query: 75  PKVRSLNKIXXXXXXXXXXXRACAALPENYNFEIHKTIWRIRSTAAKRVALQMPEGLTMF 254
           PK    N+I            A + LP  Y+FE+HK +WRI+++ AKR+ALQ+PEGL M+
Sbjct: 18  PKRFIKNQIPDSILGDASLNAAISILPSIYHFEVHKCVWRIKTSNAKRIALQLPEGLLMY 77



 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 27/63 (42%), Positives = 39/63 (61%)
 Frame = +1

Query: 472 TFHRNNKSKLSI*THLALVSTIQFVTTLHSVAKNLRIEEYMVTVPQTKPLSPGEILGCTA 651
           T H N  S +    ++ L  TIQF + + +V   L  + + V +PQ+KPLS GE+LGCTA
Sbjct: 155 TIHLNLASDVK---NIILAGTIQFTSAIRAVKPELEKQGFNVLIPQSKPLSAGEVLGCTA 211

Query: 652 PKL 660
           PK+
Sbjct: 212 PKV 214


>At3g59630.1 68416.m06653 diphthamide synthesis DPH2 family protein 
           contains InterPro accession IPR002728: Diphthamide
           synthesis DPH2 protein
          Length = 491

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 26/77 (33%), Positives = 44/77 (57%)
 Frame = +2

Query: 281 TFTEADTVIMGDVTYGACCIDDFTAVALGVDLLVHYGHSCLIPIDQTSSIKVLYIFVDIK 460
           T  E    +M D TYG+CCID+  A+ +  + +VHYG +CL P   TS +   ++F    
Sbjct: 53  TDREVRFFVMADTTYGSCCIDEVGALHIDSECVVHYGQTCLSP---TSVLPAFFVFGKAS 109

Query: 461 IDPSHFIETIKVNFPSK 511
           I+ S  ++ + +++ SK
Sbjct: 110 INVSSCVKHL-IDYASK 125


>At3g17360.1 68416.m02218 kinesin motor protein-related similar to
            KLP2 protein GB:CAA63826 from [Xenopus laevis]
          Length = 2008

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -3

Query: 413  LWELGKSVHSAQGGLHRVPQ 354
            L EL ++VH+AQ   HRVPQ
Sbjct: 1931 LAELDRTVHNAQASNHRVPQ 1950


>At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein
           contains PF01422: NF-X1 type zinc finger
          Length = 912

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 18/56 (32%), Positives = 23/56 (41%)
 Frame = +1

Query: 214 NAWPYRCLKV*LCFNDPL*HNRNIHRSRYCDNGRCDIRSLLYR*LHCCGTRCRPPC 381
           N  P RC K  LC   PL  +    +   C  G C    LL    + CG +C+  C
Sbjct: 478 NQKPPRCRK--LCHITPLCRHGQNQKPHKCHYGACPPCRLLCDEEYPCGHKCKLRC 531


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,773,059
Number of Sequences: 28952
Number of extensions: 304013
Number of successful extensions: 617
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)