Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0126
         (447 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    73   3e-14
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    27   1.3  
SPCC1753.01c |ssb2|SPCC584.06c, rpa2|single-stranded DNA binding...    26   3.0  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    25   7.0  
SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103 |Sch...    25   7.0  
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    24   9.3  

>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 72.5 bits (170), Expect = 3e-14
 Identities = 34/72 (47%), Positives = 49/72 (68%)
 Frame = +3

Query: 33  NPFQIPLLHTIILIRSGVTVT*AHHSLIENNFSQTKQRLLLTILLGFYFTILQAYEYIEA 212
           +P ++PLL+T+IL+ SG ++T AH+SLI  N     + L +TI L F F   QAYEY  A
Sbjct: 137 DPLEVPLLNTVILLTSGASLTYAHYSLIARNRENALKGLYMTIALSFLFLGGQAYEYWNA 196

Query: 213 SFTIADRIYGST 248
            FTI+D +YG++
Sbjct: 197 PFTISDSVYGAS 208



 Score = 72.5 bits (170), Expect = 3e-14
 Identities = 31/61 (50%), Positives = 39/61 (63%)
 Frame = +2

Query: 248 FFLATGFHGIHVIIGTLFLLICYIRHLNNHFSKNHHFGFEAAA*Y*HFVDVV*LFLYISI 427
           F+ ATG HGIH+I+GT+ LL+        H +  HH GFE    Y HF DVV LFLY++I
Sbjct: 209 FYFATGLHGIHIIVGTILLLVATYNIYTYHLTNTHHNGFECGIYYWHFCDVVWLFLYLTI 268

Query: 428 Y 430
           Y
Sbjct: 269 Y 269


>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +1

Query: 217 LQLLIEFMDPLFSSNRISWNSCNNWNFISINLLY 318
           L+LLIEFMDP   ++    +S N + F  + L+Y
Sbjct: 579 LRLLIEFMDPELFAHLEKTDSSNLFCFFRMLLIY 612


>SPCC1753.01c |ssb2|SPCC584.06c, rpa2|single-stranded DNA binding
           protein Ssb2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 279

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 266 FHGIHVIIGTLFLLICYIRHLNNHFSKNHHFGFEAAA*Y*HF 391
           +  I +  G +++   YIR + +H   + HF  EA A + HF
Sbjct: 130 YGNIKIFSGKIYIASQYIRTIKDHNEVHFHF-LEAIAVHLHF 170


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 233 NLWIHFFLATGFHGIHVIIGTLF 301
           N W   F+  GF GI+V I ++F
Sbjct: 553 NWWWRSFITPGFCGIYVFIFSVF 575


>SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 329 NNHFSKNHHFG 361
           NNHF+K HH G
Sbjct: 162 NNHFTKTHHQG 172


>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 147 LLLTILLGFYFTILQAYEYIE 209
           LLL +L+   FT++  Y+YIE
Sbjct: 61  LLLLLLIPALFTLIWIYKYIE 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,537,204
Number of Sequences: 5004
Number of extensions: 25446
Number of successful extensions: 61
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)