Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0126
         (447 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23393| Best HMM Match : YagB_YeeU_YfjZ (HMM E-Value=7.2)            28   4.0  
SB_22760| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_45900| Best HMM Match : Chordopox_A13L (HMM E-Value=7.4)            27   7.1  

>SB_23393| Best HMM Match : YagB_YeeU_YfjZ (HMM E-Value=7.2)
          Length = 131

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 18/56 (32%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
 Frame = +3

Query: 66  ILIRSGVTVT*AHHSL--IENNFSQTKQRLLLTILLGFYFTILQAYEYIEASFTIA 227
           +L+++G ++  A  +L  +E+ +SQT++ +L  +L   YF +   Y Y  + FTIA
Sbjct: 34  LLVQNGKSIRYASRALSDVESRYSQTEREMLGVVLAAEYFRL---YLY-GSEFTIA 85


>SB_22760| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 570

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 9   PPSRITPFNPFQIPLLHTIILIRS 80
           PP+R  P  P +IP++HT I  RS
Sbjct: 534 PPTRSWPEPPVRIPVVHTTIPTRS 557


>SB_45900| Best HMM Match : Chordopox_A13L (HMM E-Value=7.4)
          Length = 152

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +2

Query: 269 HGIHVIIGTLFLLICYIRHLNNHFSKNHHFGFEAAA*Y 382
           H I +IIG + + I  +  +  H  ++HH  F     Y
Sbjct: 3   HIIIIIIGVIIIAISTVAIVTGHLQQHHHHHFHQCGHY 40


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,480,109
Number of Sequences: 59808
Number of extensions: 156044
Number of successful extensions: 296
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 883875528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)