Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0126
         (447 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07687.1 68415.m00937 cytochrome c oxidase subunit 3 identica...    98   3e-21

>At2g07687.1 68415.m00937 cytochrome c oxidase subunit 3 identical
           to cytochrome c oxidase subunit 3 (GI:15215914)
           [Arabidopsis thaliana]; similar to Cytochrome c oxidase
           polypeptide III (EC 1.9.3.1) (Swiss-Prot:P92514)
           [Arabidopsis thaliana]
          Length = 265

 Score = 97.9 bits (233), Expect = 3e-21
 Identities = 45/61 (73%), Positives = 49/61 (80%)
 Frame = +2

Query: 248 FFLATGFHGIHVIIGTLFLLICYIRHLNNHFSKNHHFGFEAAA*Y*HFVDVV*LFLYISI 427
           FFLATGFHG HVIIGTLFL+IC IR    H +K HH GFEAAA Y HFVDVV LFL++SI
Sbjct: 200 FFLATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGFEAAAWYWHFVDVVWLFLFVSI 259

Query: 428 Y 430
           Y
Sbjct: 260 Y 260



 Score = 73.3 bits (172), Expect = 7e-14
 Identities = 36/80 (45%), Positives = 48/80 (60%)
 Frame = +3

Query: 9   PPSRITPFNPFQIPLLHTIILIRSGVTVT*AHHSLIENNFSQTKQRLLLTILLGFYFTIL 188
           PP  I   +P++IP L+T IL  SG  VT AHH+++     +    L+ T+LL   FT  
Sbjct: 120 PPKGIEVLDPWEIPFLNTPILPSSGAAVTWAHHAILAGKEKRAVYALVATVLLALVFTGF 179

Query: 189 QAYEYIEASFTIADRIYGST 248
           Q  EY +A FTI+D IYGST
Sbjct: 180 QGMEYYQAPFTISDSIYGST 199


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,596,628
Number of Sequences: 28952
Number of extensions: 118258
Number of successful extensions: 204
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 722638680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)