Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0125
(702 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 196 2e-50
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 196 2e-50
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 155 3e-38
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 154 7e-38
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 138 3e-33
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 123 1e-28
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 123 1e-28
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 105 4e-23
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 69 2e-12
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 69 2e-12
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 67 1e-11
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 67 1e-11
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 67 1e-11
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 43 2e-04
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 41 7e-04
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 38 0.009
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 35 0.065
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 35 0.065
AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical ... 34 0.11
AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical... 33 0.15
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 33 0.20
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 33 0.26
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 33 0.26
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 31 0.80
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 31 0.80
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 31 1.1
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 31 1.1
Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical p... 29 2.4
Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical p... 29 2.4
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 27 9.8
AF040643-5|AAT81201.1| 299|Caenorhabditis elegans Hypothetical ... 27 9.8
AC084196-7|AAK29949.2| 284|Caenorhabditis elegans Hypothetical ... 27 9.8
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 196 bits (477), Expect = 2e-50
Identities = 96/143 (67%), Positives = 108/143 (75%)
Frame = +3
Query: 255 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 434
IDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQ
Sbjct: 73 IDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQ 132
Query: 435 TREHALLAFTLGVKQLIVGVNKMDSLNHHTVSPDLRKSRRKYPHTSRRLATTQLLSLFVP 614
TREHALLA TLGVKQLIV NKMDS + + +++ FVP
Sbjct: 133 TREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVP 192
Query: 615 ISGWHGDNMLEPSTKMPWVQGMA 683
ISG++GDNMLE S+ MPW +G A
Sbjct: 193 ISGFNGDNMLEVSSNMPWFKGWA 215
Score = 154 bits (373), Expect = 7e-38
Identities = 71/72 (98%), Positives = 71/72 (98%)
Frame = +1
Query: 40 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 219
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 220 DKLKAERERGIT 255
DKLKAERERGIT
Sbjct: 61 DKLKAERERGIT 72
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 196 bits (477), Expect = 2e-50
Identities = 96/143 (67%), Positives = 108/143 (75%)
Frame = +3
Query: 255 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 434
IDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQ
Sbjct: 73 IDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQ 132
Query: 435 TREHALLAFTLGVKQLIVGVNKMDSLNHHTVSPDLRKSRRKYPHTSRRLATTQLLSLFVP 614
TREHALLA TLGVKQLIV NKMDS + + +++ FVP
Sbjct: 133 TREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVP 192
Query: 615 ISGWHGDNMLEPSTKMPWVQGMA 683
ISG++GDNMLE S+ MPW +G A
Sbjct: 193 ISGFNGDNMLEVSSNMPWFKGWA 215
Score = 154 bits (373), Expect = 7e-38
Identities = 71/72 (98%), Positives = 71/72 (98%)
Frame = +1
Query: 40 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 219
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 220 DKLKAERERGIT 255
DKLKAERERGIT
Sbjct: 61 DKLKAERERGIT 72
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 155 bits (376), Expect = 3e-38
Identities = 80/100 (80%), Positives = 84/100 (84%)
Frame = +3
Query: 255 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 434
IDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQ
Sbjct: 73 IDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQ 132
Query: 435 TREHALLAFTLGVKQLIVGVNKMDSLNHHTVSPDLRKSRR 554
TREHALLA TLGVKQL+ SL T SPD SRR
Sbjct: 133 TREHALLAQTLGVKQLV-------SLRSPTRSPD--SSRR 163
Score = 154 bits (373), Expect = 7e-38
Identities = 71/72 (98%), Positives = 71/72 (98%)
Frame = +1
Query: 40 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 219
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 220 DKLKAERERGIT 255
DKLKAERERGIT
Sbjct: 61 DKLKAERERGIT 72
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 154 bits (373), Expect = 7e-38
Identities = 71/72 (98%), Positives = 71/72 (98%)
Frame = +1
Query: 40 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 219
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 220 DKLKAERERGIT 255
DKLKAERERGIT
Sbjct: 61 DKLKAERERGIT 72
Score = 96.3 bits (229), Expect(2) = 1e-28
Identities = 42/45 (93%), Positives = 45/45 (100%)
Frame = +3
Query: 255 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 389
IDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA
Sbjct: 73 IDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVA 117
Score = 54.4 bits (125), Expect = 7e-08
Identities = 24/33 (72%), Positives = 26/33 (78%)
Frame = +2
Query: 509 TEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAF 607
TEPP+SE RF EI EVS +IKKIGYNP AV F
Sbjct: 124 TEPPFSEARFTEITNEVSGFIKKIGYNPKAVPF 156
Score = 48.0 bits (109), Expect(2) = 1e-28
Identities = 25/68 (36%), Positives = 35/68 (51%)
Frame = +3
Query: 480 LIVGVNKMDSLNHHTVSPDLRKSRRKYPHTSRRLATTQLLSLFVPISGWHGDNMLEPSTK 659
L+V NKMDS + + +++ FVPISG++GDNMLE S+
Sbjct: 114 LVVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSN 173
Query: 660 MPWVQGMA 683
MPW +G A
Sbjct: 174 MPWFKGWA 181
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 138 bits (335), Expect = 3e-33
Identities = 63/67 (94%), Positives = 64/67 (95%)
Frame = +1
Query: 40 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 219
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 220 DKLKAER 240
DKLK +
Sbjct: 61 DKLKVTK 67
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 123 bits (296), Expect = 1e-28
Identities = 65/141 (46%), Positives = 91/141 (64%)
Frame = +3
Query: 255 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 434
+DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEFE G GQ
Sbjct: 236 MDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFENGGQ 295
Query: 435 TREHALLAFTLGVKQLIVGVNKMDSLNHHTVSPDLRKSRRKYPHTSRRLATTQLLSLFVP 614
T+EHALL +LGV QLIV VNK+D+++ D K+ +R+ ++ FVP
Sbjct: 296 TKEHALLLRSLGVTQLIVAVNKLDTVDWSQDRFDEIKNNLSV-FLTRQAGFSK--PKFVP 352
Query: 615 ISGWHGDNMLEPSTKMPWVQG 677
+SG+ G+N+++ ++ W G
Sbjct: 353 VSGFTGENLIK-RMELDWYDG 372
Score = 90.6 bits (215), Expect = 9e-19
Identities = 39/69 (56%), Positives = 52/69 (75%)
Frame = +1
Query: 49 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 228
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 226
Query: 229 KAERERGIT 255
+ ERERG+T
Sbjct: 227 EEERERGVT 235
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 123 bits (296), Expect = 1e-28
Identities = 65/141 (46%), Positives = 91/141 (64%)
Frame = +3
Query: 255 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 434
+DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEFE G GQ
Sbjct: 254 MDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFENGGQ 313
Query: 435 TREHALLAFTLGVKQLIVGVNKMDSLNHHTVSPDLRKSRRKYPHTSRRLATTQLLSLFVP 614
T+EHALL +LGV QLIV VNK+D+++ D K+ +R+ ++ FVP
Sbjct: 314 TKEHALLLRSLGVTQLIVAVNKLDTVDWSQDRFDEIKNNLSV-FLTRQAGFSK--PKFVP 370
Query: 615 ISGWHGDNMLEPSTKMPWVQG 677
+SG+ G+N+++ ++ W G
Sbjct: 371 VSGFTGENLIK-RMELDWYDG 390
Score = 90.6 bits (215), Expect = 9e-19
Identities = 39/69 (56%), Positives = 52/69 (75%)
Frame = +1
Query: 49 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 228
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 244
Query: 229 KAERERGIT 255
+ ERERG+T
Sbjct: 245 EEERERGVT 253
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 105 bits (251), Expect = 4e-23
Identities = 53/127 (41%), Positives = 74/127 (58%), Gaps = 1/127 (0%)
Frame = +3
Query: 255 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 434
+++ FET K + TI+DAPGH+ F+ NMI G +QAD AVL+++A GEFE G + GQ
Sbjct: 175 VEVGRAYFETEKRHFTILDAPGHKSFVPNMIVGANQADLAVLVISARRGEFETGFDRGGQ 234
Query: 435 TREHALLAFTLGVKQLIVGVNKMDSLNHHTVSPDLRKSRRKYPHTSRRLATTQLLSL-FV 611
TREH++L T GVK L++ VNKMD ++ K R+L + +V
Sbjct: 235 TREHSMLVKTAGVKHLVILVNKMDDPTVKWEEERFKEIEGKLTPFLRKLGFNPKTDITYV 294
Query: 612 PISGWHG 632
P SG G
Sbjct: 295 PCSGLTG 301
Score = 83.0 bits (196), Expect = 2e-16
Identities = 36/71 (50%), Positives = 51/71 (71%)
Frame = +1
Query: 43 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 222
G K HIN+V +GHVD+GKST G L++ G +DKRT+EK+E+EA+E G+ S+ +W +D
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMD 163
Query: 223 KLKAERERGIT 255
ERE+G T
Sbjct: 164 TNDEEREKGKT 174
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 69.3 bits (162), Expect = 2e-12
Identities = 38/84 (45%), Positives = 51/84 (60%)
Frame = +3
Query: 255 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 434
I++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA G E Q
Sbjct: 96 INVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME-------Q 148
Query: 435 TREHALLAFTLGVKQLIVGVNKMD 506
T+EH +LA +GVK + + +NK D
Sbjct: 149 TKEHLILAKQVGVKNMAIFINKAD 172
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 52 KTHINIVVIGHVDSGKSTTT 111
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 69.3 bits (162), Expect = 2e-12
Identities = 38/84 (45%), Positives = 51/84 (60%)
Frame = +3
Query: 255 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 434
I++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA G E Q
Sbjct: 96 INVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME-------Q 148
Query: 435 TREHALLAFTLGVKQLIVGVNKMD 506
T+EH +LA +GVK + + +NK D
Sbjct: 149 TKEHLILAKQVGVKNMAIFINKAD 172
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 52 KTHINIVVIGHVDSGKSTTT 111
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 66.9 bits (156), Expect = 1e-11
Identities = 37/82 (45%), Positives = 52/82 (63%), Gaps = 2/82 (2%)
Frame = +3
Query: 273 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL 452
++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G QTREH L
Sbjct: 106 EYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP-------QTREHLL 158
Query: 453 LAFTLGV--KQLIVGVNKMDSL 512
LA +GV ++V +NK+D +
Sbjct: 159 LARQVGVPLDNIVVFMNKVDEV 180
Score = 36.3 bits (80), Expect = 0.021
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +1
Query: 46 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 216
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 104
Query: 217 LDKLKAER 240
L+ A+R
Sbjct: 105 LEYETAKR 112
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 66.9 bits (156), Expect = 1e-11
Identities = 37/82 (45%), Positives = 52/82 (63%), Gaps = 2/82 (2%)
Frame = +3
Query: 273 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL 452
++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G QTREH L
Sbjct: 107 EYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP-------QTREHLL 159
Query: 453 LAFTLGV--KQLIVGVNKMDSL 512
LA +GV ++V +NK+D +
Sbjct: 160 LARQVGVPLDNIVVFMNKVDEV 181
Score = 36.3 bits (80), Expect = 0.021
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +1
Query: 46 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 216
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 105
Query: 217 LDKLKAER 240
L+ A+R
Sbjct: 106 LEYETAKR 113
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 66.9 bits (156), Expect = 1e-11
Identities = 37/82 (45%), Positives = 52/82 (63%), Gaps = 2/82 (2%)
Frame = +3
Query: 273 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL 452
++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G QTREH L
Sbjct: 107 EYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP-------QTREHLL 159
Query: 453 LAFTLGV--KQLIVGVNKMDSL 512
LA +GV ++V +NK+D +
Sbjct: 160 LARQVGVPLDNIVVFMNKVDEV 181
Score = 36.3 bits (80), Expect = 0.021
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +1
Query: 46 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 216
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 105
Query: 217 LDKLKAER 240
L+ A+R
Sbjct: 106 LEYETAKR 113
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 42.7 bits (96), Expect = 2e-04
Identities = 26/86 (30%), Positives = 44/86 (51%)
Frame = +3
Query: 297 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 476
+ +ID PGH I+ ++ ++ D A++I+ + AGI QT EH LLA
Sbjct: 74 LALIDCPGHSGLIRAVLAASTVFDMAIVII-----DVVAGIQP--QTAEHLLLASKFCPN 126
Query: 477 QLIVGVNKMDSLNHHTVSPDLRKSRR 554
++I+ +NK D +S +K R+
Sbjct: 127 RVIIVLNKCDLAEKSKISESAKKVRK 152
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +1
Query: 61 INIVVIGHVDSGKSTTT 111
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 41.1 bits (92), Expect = 7e-04
Identities = 29/73 (39%), Positives = 34/73 (46%)
Frame = +3
Query: 297 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 476
VT +D PGH F G AD VL+VAA G E QT + A V
Sbjct: 206 VTFLDTPGHAAFASMRARGAKGADIVVLVVAADDGVKE-------QTAQSIKFAKDANV- 257
Query: 477 QLIVGVNKMDSLN 515
QL+V VNK+D N
Sbjct: 258 QLVVAVNKIDKPN 270
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 37.5 bits (83), Expect = 0.009
Identities = 28/64 (43%), Positives = 33/64 (51%)
Frame = +1
Query: 64 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 243
NI VI HVD+GK+T T L+Y G I A + KG+ V D L ERE
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAI---------HVAGHVDKGN----TVTDFLDIERE 73
Query: 244 RGIT 255
RGIT
Sbjct: 74 RGIT 77
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 34.7 bits (76), Expect = 0.065
Identities = 21/64 (32%), Positives = 31/64 (48%)
Frame = +1
Query: 64 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 243
NI + H+DSGK+T T ++Y G ID + +G +D + ER+
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRID----------SMHEVRGKDDVGATMDFMDLERQ 95
Query: 244 RGIT 255
RGIT
Sbjct: 96 RGIT 99
Score = 29.1 bits (62), Expect = 3.2
Identities = 29/92 (31%), Positives = 37/92 (40%)
Frame = +3
Query: 297 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 476
+ IID PGH DF + D AVL++ G G G+ T L + +
Sbjct: 114 INIIDTPGHVDFTVEVERALRVLDGAVLVL-CGVG----GVQSQTFTVNRQLARYNV--- 165
Query: 477 QLIVGVNKMDSLNHHTVSPDLRKSRRKYPHTS 572
I VNKMD N T L R K H +
Sbjct: 166 PFICFVNKMDR-NGATPLKALDGLRNKLNHNA 196
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 34.7 bits (76), Expect = 0.065
Identities = 24/72 (33%), Positives = 35/72 (48%)
Frame = +3
Query: 291 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLG 470
Y + +ID PGH DF + + D +L+VAA G QT + LAF
Sbjct: 102 YLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQG-------VQAQTIANFWLAFEKN 154
Query: 471 VKQLIVGVNKMD 506
+ Q+I +NK+D
Sbjct: 155 I-QIIPVINKID 165
Score = 33.1 bits (72), Expect = 0.20
Identities = 23/64 (35%), Positives = 31/64 (48%)
Frame = +1
Query: 64 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 243
N ++ HVD GKST L+ CG + +K+ +LDKL+ ERE
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPG-----QKQ-------------MLDKLQVERE 85
Query: 244 RGIT 255
RGIT
Sbjct: 86 RGIT 89
>AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical
protein Y39G10AR.8 protein.
Length = 469
Score = 33.9 bits (74), Expect = 0.11
Identities = 20/71 (28%), Positives = 32/71 (45%)
Frame = +3
Query: 294 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 473
+V+ +D PGH + M+ G + D A L+VA QT EH + +
Sbjct: 128 HVSFVDCPGHDILMATMLNGAAVMDAAFLLVAGNEP------CPQPQTSEHLAAVEIMQL 181
Query: 474 KQLIVGVNKMD 506
L++ NK+D
Sbjct: 182 NHLMILQNKVD 192
>AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical
protein Y54G2A.28 protein.
Length = 366
Score = 33.5 bits (73), Expect = 0.15
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = -3
Query: 499 LFTPTMSCLTPRVKASKACSRV*PFLEIPASNSPVPAATMSTA 371
LF PT+SC+ + AS S P + PA N VP AT+S +
Sbjct: 13 LFDPTLSCMATQNSASATLSCANPTVAAPA-NDDVPEATLSVS 54
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 33.1 bits (72), Expect = 0.20
Identities = 24/77 (31%), Positives = 36/77 (46%)
Frame = +3
Query: 303 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL 482
IID PGH F G+S D A+L+V + G+ QT E +L G
Sbjct: 553 IIDTPGHESFSNLRTRGSSLCDFAILVV-----DIMHGLEP--QTIE-SLKLLIKGKTPF 604
Query: 483 IVGVNKMDSLNHHTVSP 533
++ +NK+D L + +P
Sbjct: 605 VIALNKIDRLYEYESNP 621
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.26
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +1
Query: 40 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 135
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +3
Query: 291 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 401
+ + +ID+PGH DF + D A+++V +G
Sbjct: 110 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 146
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.26
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +1
Query: 40 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 135
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +3
Query: 291 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 401
+ + +ID+PGH DF + D A+++V +G
Sbjct: 110 FLINLIDSPGHVDFSSEVTAALGVTDGALVVVDCVSG 146
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 31.1 bits (67), Expect = 0.80
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +1
Query: 16 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 126
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 31.1 bits (67), Expect = 0.80
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +1
Query: 16 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 126
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +3
Query: 255 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 401
+ I + Y + IID PGH +F M AD V++V A G
Sbjct: 189 VSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 237
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +3
Query: 255 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 401
+ I + Y + IID PGH +F M AD V++V A G
Sbjct: 64 VSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 112
>Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical
protein F54D5.5b protein.
Length = 492
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 142 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 243
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 272 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 305
>Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical
protein F54D5.5a protein.
Length = 427
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 142 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 243
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 207 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 240
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +1
Query: 61 INIVVIGHVDSGKSTTT 111
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical
protein D1081.4 protein.
Length = 381
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +3
Query: 297 VTIIDAPGHRDFI--KNMITGTSQADCAVLIVAA 392
V IID+ G RDFI KN+ GT AD +++ AA
Sbjct: 73 VQIIDSSGSRDFIGMKNLYIGT--ADAFLVVFAA 104
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +3
Query: 297 VTIIDAPGHRDFIKNMITGTSQADCAVLIV 386
+ +ID+PGH DF + + +D A+L++
Sbjct: 85 INLIDSPGHVDFSGEVTSALILSDIALLLI 114
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +3
Query: 297 VTIIDAPGHRDFIKNMITGTSQADCAVLIV 386
+ +ID+PGH DF + + +D A+L++
Sbjct: 85 INLIDSPGHVDFSGEVTSALILSDIALLLI 114
>AF040643-5|AAT81201.1| 299|Caenorhabditis elegans Hypothetical
protein F14D2.15 protein.
Length = 299
Score = 27.5 bits (58), Expect = 9.8
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Frame = -2
Query: 482 ELFDTEGESEQGMLTGLTVLRDTSFEF-----TGTGSYDEHSAISLRGSCDH--VLDEIS 324
E + +E E G+ L V RD F + +GTGS + H ++R DH + +
Sbjct: 24 EHYTSEEEDHFGIKWWLRVTRDDQFLYVDLGKSGTGSTNFHGNFNVRVESDHGVISENFK 83
Query: 323 VSRSINDGNI 294
S S +D I
Sbjct: 84 FSGSKSDAEI 93
>AC084196-7|AAK29949.2| 284|Caenorhabditis elegans Hypothetical
protein Y55D5A.6 protein.
Length = 284
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
Frame = -2
Query: 332 EISVSRSINDGNIVLASFELPESNIDVIPRSRSAFSL------SNTQAYLK--DPLPISW 177
EI + I + ++L +F+LP+ ++ ++P + + +N Q L DP+ W
Sbjct: 38 EIGIENLIQEHELILGNFQLPKISMHILPAGEESLTTKTQNFEANEQKVLNVGDPIMFEW 97
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,664,060
Number of Sequences: 27780
Number of extensions: 355699
Number of successful extensions: 1124
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1107
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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