Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0124
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch...    27   2.5  
SPBC14C8.04 |||acetolactate synthase regulatory unit|Schizosacch...    27   2.5  
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    26   4.4  
SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac...    26   4.4  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    26   5.9  
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    25   7.8  
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy...    25   7.8  

>SPAC25G10.08 |||translation initiation factor eIF3b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 725

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +2

Query: 374 EDVRLASIYKPIEADPVMTVEEKTKHMVDWYIAAHALLKGVQFP 505
           E VRL  I  P       T +++ KH   W IA+  +L+  + P
Sbjct: 253 EPVRLPPIGHPARETMPFTDDDEGKHCFVWDIASGRILRSFKIP 296


>SPBC14C8.04 |||acetolactate synthase regulatory
           unit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 289

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 24/90 (26%), Positives = 40/90 (44%)
 Frame = -2

Query: 675 RAVTKNSPPSKLPQRILLIPPRTPAPEPHGSDSKLSIFNALPKTVYHFISYMCQFALGNC 496
           +A+  NSP   LP+  ++ PPR   PE   +    + FN + +   H  + + Q   G  
Sbjct: 28  KALHANSP---LPRCRIIEPPRATVPEAVSNIIMSTPFNRVQRPKRHVFNCLVQNEPGVL 84

Query: 495 TPLSNA*AAIYQSTMCLVFSSTVITGSASM 406
           + LS   AA   +   LV  +T +   + M
Sbjct: 85  SRLSGILAARGFNIDSLVVCATEVENLSRM 114


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +2

Query: 347 PSIPQHYKDEDVRLASIYKPIEADPVMTVEEKTKHMVDWYIAAHA 481
           PS+P    +  V   + Y+  EADPV    +  KH+ D++  ++A
Sbjct: 190 PSLPLLDSNAVVECFNSYQS-EADPVSNASKALKHVNDYFNTSYA 233


>SPCC777.14 |prp4||serine/threonine protein kinase
           Prp4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 477

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = +2

Query: 350 SIPQHYKDEDVRLASIYKPIEADPVM 427
           SIP+    EDV   S  KPIEA P M
Sbjct: 37  SIPEKKLKEDVDQVSTTKPIEAVPKM 62


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1418

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 18/58 (31%), Positives = 25/58 (43%)
 Frame = -2

Query: 303  LSKVCLVSVWSKSVTISICCVRLL*FYLTSRLVPSRL*YGCFLC*TPEFLEASLKPSL 130
            L    L+S  S +V    C ++ L  +    +VP  +   CFLC TP F      P L
Sbjct: 1296 LDNFFLLSSLSDNVRCRCCGIKHLPAHCPLSIVPLEI---CFLCGTPHFSGRDTCPML 1350


>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 587 P*GSGAGVLGGIRRIRCGSFEGGEFFV 667
           P G+GAG+  G+ +     FE G+F +
Sbjct: 135 PFGAGAGISAGLYKFTTREFEFGKFLL 161


>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +2

Query: 335 FRECPSIPQHYKDEDVRLASIYKPIEADPVMTVEEKTK 448
           F+    +P  + DE+  +    KPI  + V+ + EK K
Sbjct: 653 FQSKEGLPDWFLDEETTVNKPNKPITKEAVLALREKMK 690


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,969,144
Number of Sequences: 5004
Number of extensions: 63221
Number of successful extensions: 177
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)