Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0124
         (688 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0502 + 24947444-24947665,24947768-24947823,24947929-249480...    40   0.001
05_02_0085 - 6465126-6466049                                           32   0.37 
12_02_0387 + 18453328-18453456,18453699-18453836,18454085-184541...    28   8.0  

>03_05_0502 +
           24947444-24947665,24947768-24947823,24947929-24948099,
           24948508-24948631,24949086-24949142,24949216-24949312,
           24949619-24949826,24950637-24950697,24950793-24950846
          Length = 349

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
 Frame = +2

Query: 254 EIVTDFDHTLTRH-TLDNGKSVLTSFGMFRECPSIPQHYKDEDVRLASIYKPIEADPVMT 430
           +++ DFD TLTR+   +    V    G         + Y  +   L   Y PIE  P + 
Sbjct: 80  QVIADFDGTLTRYWEFERCMCVYVVVGSHGLLRQGNEEYDAKREELFEHYHPIEICPDIP 139

Query: 431 VEEKTKHMVDWYIAAHALL 487
           + EK K M +W+   HALL
Sbjct: 140 LPEKAKLMEEWWEKTHALL 158


>05_02_0085 - 6465126-6466049
          Length = 307

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -2

Query: 657 SPPSKLPQRILLIPPRTPAPEPHGSDSKLSIFNALPKTVYH 535
           SPP+  P ++  + P+ P P P  S  + ++F  L +T+ H
Sbjct: 102 SPPTPKPNQVAAVSPQLPLPLPPVSPGRRTLFLDLDETLIH 142


>12_02_0387 +
           18453328-18453456,18453699-18453836,18454085-18454144,
           18461532-18462591,18463022-18463521
          Length = 628

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 618 PPRTPAPEPHGSDSKLSIFNAL 553
           P  TP P PHG  +K+ I +AL
Sbjct: 598 PKHTPKPTPHGKITKVQICHAL 619


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,687,327
Number of Sequences: 37544
Number of extensions: 401282
Number of successful extensions: 1147
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1145
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)