Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0124
         (688 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22471| Best HMM Match : EGF (HMM E-Value=1.8)                       34   0.094
SB_6850| Best HMM Match : TPR_2 (HMM E-Value=1.7e-08)                  34   0.094
SB_19535| Best HMM Match : HEAT (HMM E-Value=1.1)                      30   2.0  
SB_1052| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.0  
SB_45587| Best HMM Match : Somatomedin_B (HMM E-Value=1e-06)           29   2.7  
SB_9148| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.5  
SB_8329| Best HMM Match : FTR1 (HMM E-Value=0.87)                      29   4.7  
SB_18074| Best HMM Match : Trypan_PARP (HMM E-Value=0.081)             28   8.1  

>SB_22471| Best HMM Match : EGF (HMM E-Value=1.8)
          Length = 145

 Score = 34.3 bits (75), Expect = 0.094
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +2

Query: 233 KRRTQQIEIVTDFDHTLTRHTLDNGKSVLTSF--GMFRECPSIPQHYKDE 376
           K+R + + +VTD   +L   TL+N   V  +   G F EC    Q Y+D+
Sbjct: 59  KQREEALALVTDLSDSLVDRTLENCTEVFEAICSGEFGECEKTAQSYRDQ 108


>SB_6850| Best HMM Match : TPR_2 (HMM E-Value=1.7e-08)
          Length = 523

 Score = 34.3 bits (75), Expect = 0.094
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +2

Query: 233 KRRTQQIEIVTDFDHTLTRHTLDNGKSVLTSF--GMFRECPSIPQHYKDE 376
           K+R + + +VTD   +L   TL+N   V  +   G F EC    Q Y+D+
Sbjct: 374 KQREEALALVTDLSDSLVDRTLENCTEVFEAICSGEFGECEKTAQSYRDQ 423


>SB_19535| Best HMM Match : HEAT (HMM E-Value=1.1)
          Length = 368

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = +3

Query: 63  YNLDGRQTFEYYIIILFLN*LMAMKVLTRLQEIPEFNRENIHIRDETELVAKLNRIIKGG 242
           +N D R+ F Y + +LF   +      T L+ +PE +++ +H   +T    K  +II   
Sbjct: 77  WNEDNRRRFRYNVKVLFERLIRKFGYQTALKCVPEDHQKLVHNIHKTTQRLKRQKIISRA 136

Query: 243 HN 248
            N
Sbjct: 137 KN 138


>SB_1052| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1092

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
 Frame = -2

Query: 621 IPPRTPAPEPHGSDSKLSIFNALPKTVYHFISYMCQFALGNCTPLSNA*A----AIYQST 454
           IPP TP P+   S+S+ S+    P  VY      CQ +L  CTP+           Y  T
Sbjct: 783 IPPPTPPPQRR-SESR-SLATLQPSLVYCTPIKGCQCSLVYCTPIKGCQCKWQMKFYYRT 840

Query: 453 MC 448
           MC
Sbjct: 841 MC 842


>SB_45587| Best HMM Match : Somatomedin_B (HMM E-Value=1e-06)
          Length = 1003

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -1

Query: 340 SEHTKTSENGFSIIQSVS-CQRMVKICHYLNLLCPPFMILFNFATSSVSS 194
           S   K   N F   +S S CQ  ++  +    L PPF I+FNF T+  S+
Sbjct: 523 SSANKNYRNSFCYSESSSSCQPKIQTENGGPPLLPPFSIIFNFGTNDRST 572


>SB_9148| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 111

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 20/58 (34%), Positives = 28/58 (48%)
 Frame = -2

Query: 306 PLSKVCLVSVWSKSVTISICCVRLL*FYLTSRLVPSRL*YGCFLC*TPEFLEASLKPS 133
           PLS  C V +   SV +   C+RLL F + S    +R+     +   PE   AS +PS
Sbjct: 43  PLSTACKVLIVGMSVIMEYLCLRLLGFNIVSVYRRARITALTIIGRKPEERTASPEPS 100


>SB_8329| Best HMM Match : FTR1 (HMM E-Value=0.87)
          Length = 371

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
 Frame = -3

Query: 587 GLTPNY------QSLTPFLKLSIILLATCVNSLLEIVLL*VMHEQQYTNRPCVWSS 438
           GLTP+Y       SL P   L+I++     + +L IV+  +     YTN  C+WS+
Sbjct: 275 GLTPSYILTIVVYSLKPSYILTIVVYGLTPSYILTIVVYGLT--PSYTNHSCLWSN 328


>SB_18074| Best HMM Match : Trypan_PARP (HMM E-Value=0.081)
          Length = 524

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
 Frame = -2

Query: 666 TKNSPPSKLPQRILLI---PPRTPAPEP 592
           TK  PP+KLP R  +    P R P PEP
Sbjct: 237 TKRKPPAKLPPRQPVAEPEPERQPEPEP 264


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,848,956
Number of Sequences: 59808
Number of extensions: 461601
Number of successful extensions: 1041
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1041
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)