Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0124
         (688 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g38680.1 68415.m04750 pyrimidine 5'-nucleotidase family prote...    37   0.014
At3g48530.1 68416.m05299 CBS domain-containing protein low simil...    31   0.72 
At4g13610.1 68417.m02118 DNA (cytosine-5-)-methyltransferase, pu...    30   1.7  
At1g49750.1 68414.m05579 leucine-rich repeat family protein cont...    30   1.7  
At5g58300.1 68418.m07298 leucine-rich repeat transmembrane prote...    28   5.0  
At3g09590.1 68416.m01139 pathogenesis-related protein, putative ...    28   5.0  
At2g25180.1 68415.m03011 two-component responsive regulator fami...    28   5.0  
At5g18220.1 68418.m02138 glycosyl hydrolase family 17 protein si...    28   6.7  
At3g50140.1 68416.m05481 expressed protein contains Pfam profile...    28   6.7  
At1g77630.1 68414.m09038 peptidoglycan-binding LysM domain-conta...    28   6.7  

>At2g38680.1 68415.m04750 pyrimidine 5'-nucleotidase family protein
           / uridine monophosphate hydrolase-1 (UMPH-1) family
           protein similar to pyrimidine 5'-nucleotidase [Homo
           sapiens] GI:11245474; contains Pfam profile PF05822:
           Pyrimidine 5'-nucleotidase (UMPH-1)
          Length = 275

 Score = 36.7 bits (81), Expect = 0.014
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +2

Query: 362 HYKDEDVRLASIYKPIEADPVMTVEEKTKHMVDWYIAAHALL 487
           +Y  +   L   Y P+E  PV+ ++EKTK M +W+   H LL
Sbjct: 47  YYDAKRQALYDHYHPLEISPVIPIDEKTKLMEEWWGKTHELL 88



 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +3

Query: 546 F*EGR*RLIIWSQTHEVPVLVFSAGLGESV-VAALKAANFL 665
           F EG   L  + +  E+PVL+FSAGL + +    LK+ + L
Sbjct: 109 FREGVSELFEFLEKKEIPVLIFSAGLADVIEEVTLKSISLL 149


>At3g48530.1 68416.m05299 CBS domain-containing protein low
           similarity to SP|Q9UGI9 5'-AMP-activated protein kinase,
           gamma-3 subunit (AMPK gamma-3 chain) (AMPK gamma3) {Homo
           sapiens}; contains Pfam profile PF00571: CBS domain
          Length = 424

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = +2

Query: 239 RTQQIEIVTDFDHTLTRHTLDNGKSVLTSFGMFRECPSIPQHYKDEDVR 385
           R+  +     F H  T   LDNG S +TS G F E  +  + YK+  VR
Sbjct: 133 RSPAVAASNGFSHDFTTDVLDNGDSAVTS-GNFFEVLTSSELYKNTKVR 180


>At4g13610.1 68417.m02118 DNA (cytosine-5-)-methyltransferase,
           putative similar to cytosine-5 methyltransferase (METII)
           [Arabidopsis thaliana] GI:6523846; contains Pfam
           profiles PF01426: BAH domain, PF00145: C-5
           cytosine-specific DNA methylase
          Length = 1404

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -3

Query: 278 YGQNLSLSQFVVSAFYDSI*LRD*FRLVSNMDVFSVKLRNFLKP 147
           YG+N+ L  FVV    D + L++  +   N   F VK+R F +P
Sbjct: 816 YGRNVGLRAFVVCQILDIVDLKEPKK--GNTTSFEVKVRRFYRP 857


>At1g49750.1 68414.m05579 leucine-rich repeat family protein
           contains leucine-rich repeats, Pfam:PF00560
          Length = 494

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -2

Query: 654 PPSKLPQRILLIPPRTPAPEPHGSDSKLSIFNALPKTVY 538
           PP +LP    L PP  P P+P      L   ++L K VY
Sbjct: 90  PPPQLPPPPQLPPPAPPKPQPSPPTPDLPFASSLLKKVY 128


>At5g58300.1 68418.m07298 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 654

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -2

Query: 666 TKNSPPSKLPQRILLIPPRTPAPEPHGSDSKLSIFNALP 550
           T + PPS  P   +  PP  P P   GS  KL +   +P
Sbjct: 248 TSSPPPSLTPH--ISTPPLPPFPHKEGSKRKLHVSTIIP 284


>At3g09590.1 68416.m01139 pathogenesis-related protein, putative
           similar to SP|Q05968 Pathogenesis-related protein 1
           precursor {Hordeum vulgare}; contains Pfam profile
           PF00188: SCP-like extracellular protein
          Length = 186

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +3

Query: 432 WKRRPNTWSIGILLLMHYSKEYNFQERIDTCS 527
           W RR  TWS   ++   + + +N+  + +TC+
Sbjct: 105 WHRRKKTWSPEKVVTRWFEERFNYDVKTNTCA 136


>At2g25180.1 68415.m03011 two-component responsive regulator family
           protein / response regulator family protein contains
           Pfam profile: PF00072 response regulator receiver domain
          Length = 596

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 320 TSFGMFRECPSIPQHYKDEDVRLASIYKPIEADPVMTVEEKTKHM 454
           T  G F    S+P ++ D    L  +  P+E D + T   K+++M
Sbjct: 334 TDIGKFHHVSSLPLNHSDGGNILQGLPMPLEFDQLQTNNNKSRNM 378


>At5g18220.1 68418.m02138 glycosyl hydrolase family 17 protein
           similar to elicitor inducible chitinase Nt-SubE76
           GI:11071974 from [Nicotiana tabacum]
          Length = 488

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -1

Query: 478 MSSNIPIDHVFGLLFHGHNRVGLDGLIYT 392
           +SS+ P D+ F   F+G N V  +G+IYT
Sbjct: 215 LSSDFPFDYAF---FNGQNTVSDNGVIYT 240


>At3g50140.1 68416.m05481 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 508

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 654 PPSKLPQRILLIPPRTPAPEP 592
           PP   P R+L++PP  P P P
Sbjct: 11  PPPPPPPRLLVLPPLPPPPPP 31


>At1g77630.1 68414.m09038 peptidoglycan-binding LysM
           domain-containing protein contains Pfam profile PF01476:
           LysM domain
          Length = 423

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -2

Query: 657 SPPSKLPQRILLIPPRTPAPEPHGSD 580
           +PP  +P+ ++ +P  +P+P P   D
Sbjct: 333 APPDNVPKELMYLPSPSPSPSPEFDD 358


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,322,250
Number of Sequences: 28952
Number of extensions: 329142
Number of successful extensions: 882
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)