Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0123
         (661 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK4.17 |||NAD binding dehydrogenase family protein|Schizosa...    28   1.4  
SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme Ubc1|Schizosacch...    25   7.3  

>SPACUNK4.17 |||NAD binding dehydrogenase family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -1

Query: 277 LRSFDSI*RKILVIPNDSAY*LSFRIFLEIVHF*CEKTIWH 155
           +RS DS   K+   PND  Y   F+IFL+      +K + H
Sbjct: 345 VRSPDSDEEKVYKYPNDDPYYSEFKIFLDAAEGKGDKNLIH 385


>SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme
           Ubc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 217

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = +2

Query: 152 RMPNRLFALKVYNFQKYSKTELICGIVWYHQYFSLNTVKRAQFCFIFVFCLP 307
           R P   F  K+Y+    S+T  IC  +   Q+  + T+K A      + C P
Sbjct: 66  RPPKMNFDTKIYHPNVSSQTGAICLDILKDQWSPVYTMKSALISLQSLLCTP 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,514,683
Number of Sequences: 5004
Number of extensions: 48371
Number of successful extensions: 117
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)