Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0123
         (661 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17185| Best HMM Match : LIM (HMM E-Value=2.5)                       32   0.48 
SB_26437| Best HMM Match : Pkinase (HMM E-Value=3.6e-36)               31   1.1  
SB_20282| Best HMM Match : DUF1178 (HMM E-Value=6.1)                   28   5.9  

>SB_17185| Best HMM Match : LIM (HMM E-Value=2.5)
          Length = 100

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -2

Query: 123 RLHNKINTKYTGPRNSCCCQSY-PAAKHGAAGRCE 22
           + H +  T Y GPR S CC    P    G +GRC+
Sbjct: 41  KYHEECYTLYAGPRCSSCCDVIAPNPDEGYSGRCQ 75


>SB_26437| Best HMM Match : Pkinase (HMM E-Value=3.6e-36)
          Length = 436

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
 Frame = +2

Query: 95  YLVFILL*SRG*SLIKSSRRMPN-RLFALKVYNFQKYSKTELICGIVWYHQYFSLNTVKR 271
           YL+  LL   G S +     + N R  A K++   K  K +     + Y QY +  +  R
Sbjct: 168 YLLLSLLGKGGFSEVYKGYDLVNHRYVACKIHQLIKEWKEDKKANYIKYVQYINFKSCVR 227

Query: 272 AQFCFIFVFC 301
            +FC +  +C
Sbjct: 228 LRFCTVLEYC 237


>SB_20282| Best HMM Match : DUF1178 (HMM E-Value=6.1)
          Length = 233

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -3

Query: 131 TIPDFITK*TLSTRDLATAAVVRVTPPRNTERPAAVSTREH 9
           T P  +++   S +++       VT P   +RPA ++T EH
Sbjct: 192 TAPSDLSRSQTSQQNVPAVGTSLVTVPSTVQRPAVINTTEH 232


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,608,384
Number of Sequences: 59808
Number of extensions: 347810
Number of successful extensions: 845
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)