Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0123
(661 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC016309-1|AAH16309.1| 271|Homo sapiens ARV1 homolog (S. cerevi... 31 3.6
AL844165-6|CAI15335.1| 290|Homo sapiens ARV1 homolog (S. cerevi... 31 3.6
AL844165-5|CAI15334.1| 267|Homo sapiens ARV1 homolog (S. cerevi... 31 3.6
AL844165-4|CAI15332.1| 271|Homo sapiens ARV1 homolog (S. cerevi... 31 3.6
AL844165-3|CAI15333.1| 231|Homo sapiens ARV1 homolog (S. cerevi... 31 3.6
AL732414-4|CAH73701.1| 290|Homo sapiens ARV1 homolog (S. cerevi... 31 3.6
AL732414-3|CAH73700.1| 267|Homo sapiens ARV1 homolog (S. cerevi... 31 3.6
AL732414-2|CAH73698.1| 271|Homo sapiens ARV1 homolog (S. cerevi... 31 3.6
AL732414-1|CAH73699.1| 231|Homo sapiens ARV1 homolog (S. cerevi... 31 3.6
AF321442-1|AAK11180.1| 271|Homo sapiens cell cycle-related prot... 31 3.6
AF290878-1|AAG47671.1| 271|Homo sapiens ARV1 protein. 31 3.6
BX120009-12|CAM25991.1| 157|Homo sapiens major histocompatibili... 30 8.4
AL845446-5|CAI95553.2| 157|Homo sapiens major histocompatibilit... 30 8.4
AL662824-13|CAI17609.3| 157|Homo sapiens major histocompatibili... 30 8.4
AF271780-1|AAG44791.1| 271|Homo sapiens HT035 protein. 30 8.4
>BC016309-1|AAH16309.1| 271|Homo sapiens ARV1 homolog (S.
cerevisiae) protein.
Length = 271
Score = 31.1 bits (67), Expect = 3.6
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 143 SSRRMPNRLFALKVYNFQKYSKTELICGIVWYHQYFSL 256
++++ PN + LK Y K LI ++W H Y S+
Sbjct: 169 TAKKKPNFILLLKALLLSSYGKLLLIPAVIWEHDYTSV 206
>AL844165-6|CAI15335.1| 290|Homo sapiens ARV1 homolog (S.
cerevisiae) protein.
Length = 290
Score = 31.1 bits (67), Expect = 3.6
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 143 SSRRMPNRLFALKVYNFQKYSKTELICGIVWYHQYFSL 256
++++ PN + LK Y K LI ++W H Y S+
Sbjct: 188 TAKKKPNFILLLKALLLSSYGKLLLIPAVIWEHDYTSV 225
>AL844165-5|CAI15334.1| 267|Homo sapiens ARV1 homolog (S.
cerevisiae) protein.
Length = 267
Score = 31.1 bits (67), Expect = 3.6
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 143 SSRRMPNRLFALKVYNFQKYSKTELICGIVWYHQYFSL 256
++++ PN + LK Y K LI ++W H Y S+
Sbjct: 165 TAKKKPNFILLLKALLLSSYGKLLLIPAVIWEHDYTSV 202
>AL844165-4|CAI15332.1| 271|Homo sapiens ARV1 homolog (S.
cerevisiae) protein.
Length = 271
Score = 31.1 bits (67), Expect = 3.6
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 143 SSRRMPNRLFALKVYNFQKYSKTELICGIVWYHQYFSL 256
++++ PN + LK Y K LI ++W H Y S+
Sbjct: 169 TAKKKPNFILLLKALLLSSYGKLLLIPAVIWEHDYTSV 206
>AL844165-3|CAI15333.1| 231|Homo sapiens ARV1 homolog (S.
cerevisiae) protein.
Length = 231
Score = 31.1 bits (67), Expect = 3.6
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 143 SSRRMPNRLFALKVYNFQKYSKTELICGIVWYHQYFSL 256
++++ PN + LK Y K LI ++W H Y S+
Sbjct: 129 TAKKKPNFILLLKALLLSSYGKLLLIPAVIWEHDYTSV 166
>AL732414-4|CAH73701.1| 290|Homo sapiens ARV1 homolog (S.
cerevisiae) protein.
Length = 290
Score = 31.1 bits (67), Expect = 3.6
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 143 SSRRMPNRLFALKVYNFQKYSKTELICGIVWYHQYFSL 256
++++ PN + LK Y K LI ++W H Y S+
Sbjct: 188 TAKKKPNFILLLKALLLSSYGKLLLIPAVIWEHDYTSV 225
>AL732414-3|CAH73700.1| 267|Homo sapiens ARV1 homolog (S.
cerevisiae) protein.
Length = 267
Score = 31.1 bits (67), Expect = 3.6
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 143 SSRRMPNRLFALKVYNFQKYSKTELICGIVWYHQYFSL 256
++++ PN + LK Y K LI ++W H Y S+
Sbjct: 165 TAKKKPNFILLLKALLLSSYGKLLLIPAVIWEHDYTSV 202
>AL732414-2|CAH73698.1| 271|Homo sapiens ARV1 homolog (S.
cerevisiae) protein.
Length = 271
Score = 31.1 bits (67), Expect = 3.6
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 143 SSRRMPNRLFALKVYNFQKYSKTELICGIVWYHQYFSL 256
++++ PN + LK Y K LI ++W H Y S+
Sbjct: 169 TAKKKPNFILLLKALLLSSYGKLLLIPAVIWEHDYTSV 206
>AL732414-1|CAH73699.1| 231|Homo sapiens ARV1 homolog (S.
cerevisiae) protein.
Length = 231
Score = 31.1 bits (67), Expect = 3.6
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 143 SSRRMPNRLFALKVYNFQKYSKTELICGIVWYHQYFSL 256
++++ PN + LK Y K LI ++W H Y S+
Sbjct: 129 TAKKKPNFILLLKALLLSSYGKLLLIPAVIWEHDYTSV 166
>AF321442-1|AAK11180.1| 271|Homo sapiens cell cycle-related protein
protein.
Length = 271
Score = 31.1 bits (67), Expect = 3.6
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 143 SSRRMPNRLFALKVYNFQKYSKTELICGIVWYHQYFSL 256
++++ PN + LK Y K LI ++W H Y S+
Sbjct: 169 TAKKKPNFILLLKALLLSSYGKLLLIPAVIWEHDYTSV 206
>AF290878-1|AAG47671.1| 271|Homo sapiens ARV1 protein.
Length = 271
Score = 31.1 bits (67), Expect = 3.6
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 143 SSRRMPNRLFALKVYNFQKYSKTELICGIVWYHQYFSL 256
++++ PN + LK Y K LI ++W H Y S+
Sbjct: 169 TAKKKPNFILLLKALLLSSYGKLLLIPAVIWEHDYTSV 206
>BX120009-12|CAM25991.1| 157|Homo sapiens major histocompatibility
complex, class II, DP beta 2 (pseudogene) protein.
Length = 157
Score = 29.9 bits (64), Expect = 8.4
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +1
Query: 49 RGGVTLTTAAVARSRVLSVYFVMKSGIVL 135
RG VT+T + +LS YF++K G+VL
Sbjct: 121 RGDVTITAVRGCWTTILSGYFLLKRGVVL 149
>AL845446-5|CAI95553.2| 157|Homo sapiens major histocompatibility
complex, class II, DP beta 2 (pseudogene) protein.
Length = 157
Score = 29.9 bits (64), Expect = 8.4
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +1
Query: 49 RGGVTLTTAAVARSRVLSVYFVMKSGIVL 135
RG VT+T + +LS YF++K G+VL
Sbjct: 121 RGDVTITAVRGCWTTILSGYFLLKRGVVL 149
>AL662824-13|CAI17609.3| 157|Homo sapiens major histocompatibility
complex, class II, DP beta 2 (pseudogene) protein.
Length = 157
Score = 29.9 bits (64), Expect = 8.4
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +1
Query: 49 RGGVTLTTAAVARSRVLSVYFVMKSGIVL 135
RG VT+T + +LS YF++K G+VL
Sbjct: 121 RGDVTITAVRGCWTTILSGYFLLKRGVVL 149
>AF271780-1|AAG44791.1| 271|Homo sapiens HT035 protein.
Length = 271
Score = 29.9 bits (64), Expect = 8.4
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 143 SSRRMPNRLFALKVYNFQKYSKTELICGIVWYHQYFSL 256
++++ PN + LK Y K LI ++W H Y S+
Sbjct: 169 TAKKKPNFILLLKDLLLSSYGKLLLIPAVIWEHDYTSV 206
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,012,877
Number of Sequences: 237096
Number of extensions: 1539060
Number of successful extensions: 2895
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 2801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2895
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7422585720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -