Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0123
         (661 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69386-3|CAA93432.2|  322|Caenorhabditis elegans Hypothetical pr...    31   0.72 
U64853-5|AAB04978.2|  460|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z73422-2|CAA97765.1|  450|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>Z69386-3|CAA93432.2|  322|Caenorhabditis elegans Hypothetical
           protein ZK596.3 protein.
          Length = 322

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = -1

Query: 661 KYTFNNETTYNACRPRDGPLQH*ATSRLDSNVTHSILVAI 542
           +Y + N T YN CRPRD P     TS L S + H ++V +
Sbjct: 98  RYWYGN-TFYNYCRPRDPPRTEWMTSILRS-MNHLVIVQV 135


>U64853-5|AAB04978.2|  460|Caenorhabditis elegans Hypothetical
           protein K11G9.5 protein.
          Length = 460

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 32/111 (28%), Positives = 45/111 (40%), Gaps = 4/111 (3%)
 Frame = +1

Query: 13  SRVLTAAGRSVFRGGVTLTTAAVARSRVLSVYFVMKSGIVLD*---KFTSDAKSSFRI-K 180
           S VLT A       G    TA  A + + SV+F++ + +  D    K ++D     R  K
Sbjct: 166 SSVLTNAVSGAICEGFGWRTAFYAHAVMGSVFFILWAIVYNDDPEKKVSADELRKIRKNK 225

Query: 181 SVQFPKIFEN*VNMRNRLVSPVFFSKYCQKSAVLLYFCFLFTYVLTTINKI 333
           S Q  K     V  R  L SP+    +    A +    FL TY     N+I
Sbjct: 226 SEQHLKTKNVEVPYRKLLTSPIVLCVWLNAFAEMSIIVFLHTYAPIFFNRI 276


>Z73422-2|CAA97765.1|  450|Caenorhabditis elegans Hypothetical
           protein B0564.3 protein.
          Length = 450

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 123 RLHNKINTKYTGPRNSCCCQSYPAAKHG 40
           + ++K+ TKY  P N   C +Y A K G
Sbjct: 177 KYNSKLGTKYWIPANWALCMTYKARKDG 204


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,989,175
Number of Sequences: 27780
Number of extensions: 270785
Number of successful extensions: 625
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)