Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0122
         (424 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    23   1.6  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    21   4.9  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   6.5  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   6.5  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   6.5  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   6.5  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    20   8.6  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    20   8.6  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    20   8.6  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           20   8.6  

>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 9/44 (20%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +1

Query: 124 DEEQIPRPVHRSPQHRQGHGHAHRSRRGV-HFDIPQWLRHININ 252
           +++++ R  H+SP H   + ++   +  + H D      H++ N
Sbjct: 239 EKKELIRQTHKSPSHSVDNSNSSEKKSSIQHGDDAHKTHHLDKN 282


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -2

Query: 231 PLGNVKVYSSPRSMSVTVPLP 169
           P GN+  + S  S  +T P P
Sbjct: 250 PTGNITPHGSNTSSLITTPSP 270


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = +1

Query: 133 QIPRPVHRSPQHRQGH 180
           Q   P H  P H+Q H
Sbjct: 172 QEQHPQHHQPHHQQQH 187


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -2

Query: 75  NADMGGWWDTCSATNDNWSGLHHG 4
           N  + G    CS   D  SG H+G
Sbjct: 76  NHPLSGSKHLCSICGDRASGKHYG 99


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 12/53 (22%), Positives = 26/53 (49%)
 Frame = -2

Query: 321 YVGFVAGLHALDDHRAAQFDPRSVNIDVP*PLGNVKVYSSPRSMSVTVPLPML 163
           Y G+  G +A +   + + D + ++++ P   G  K    PR++  ++ L  L
Sbjct: 84  YTGYHLGSYAANCPPSPKDDEKCLSLERPSGGGKGKKMRKPRTIYSSLQLQQL 136



 Score = 20.2 bits (40), Expect = 8.6
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 121 VDEEQIPRPVH 153
           VDE + PRP H
Sbjct: 209 VDESRTPRPKH 219


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = +1

Query: 133 QIPRPVHRSPQHRQGH 180
           Q   P H  P H+Q H
Sbjct: 174 QEQHPQHHQPHHQQQH 189


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 8/25 (32%), Positives = 11/25 (44%)
 Frame = +1

Query: 118 GVDEEQIPRPVHRSPQHRQGHGHAH 192
           G+ E  +   + R      GH HAH
Sbjct: 341 GLGENMMDMSLTRHQISSMGHSHAH 365


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = +2

Query: 119 VWTKSKFL---GLSIGVHNIGKGTVTLIDLGEEYTL 217
           VW K + +    +S+ V  + + T+T + LGE YT+
Sbjct: 197 VWIKEESIYEERISV-VSGLHEATLTDLALGENYTV 231


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 16  SGPVVVRGRASVPPSSHI 69
           +G  V  G+A VPPS+ I
Sbjct: 92  NGEWVPGGKAEVPPSNPI 109


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 8/25 (32%), Positives = 11/25 (44%)
 Frame = +1

Query: 118 GVDEEQIPRPVHRSPQHRQGHGHAH 192
           G+ E  +   + R      GH HAH
Sbjct: 341 GLGENMMDMSLTRHQISSMGHSHAH 365


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,300
Number of Sequences: 336
Number of extensions: 2593
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9384961
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)