Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0122
         (424 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces p...    58   4e-10
SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyce...    50   2e-07
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    47   1e-06
SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces po...    40   2e-04
SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces po...    39   3e-04
SPCC1672.01 |||histidinol-phosphatase |Schizosaccharomyces pombe...    28   0.69 
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    27   0.91 
SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb...    26   2.1  
SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces p...    26   2.1  
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar...    25   3.7  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    25   3.7  
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces...    25   6.4  
SPBC947.13 |rba50||RNA polymerase II associated protein |Schizos...    25   6.4  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    24   8.5  

>SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 58.4 bits (135), Expect = 4e-10
 Identities = 30/73 (41%), Positives = 42/73 (57%)
 Frame = +2

Query: 32  FVAEQVSHHPPISAFYAEHVNKRIQFEAWVWTKSKFLGLSIGVHNIGKGTVTLIDLGEEY 211
           + AEQV HHPPISA++      +++ +  V  +S+FLG S      G  ++ L DL EEY
Sbjct: 141 YAAEQVCHHPPISAYFYLCPEYKVRIDGVVKPRSRFLGNSAASIMEGIASIKLQDLDEEY 200

Query: 212 TLTFPNGYGTSIL 250
            +T PN Y   IL
Sbjct: 201 LITQPNVYARGIL 213



 Score = 30.7 bits (66), Expect = 0.098
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +1

Query: 262 IELGGSVVIECVQTGHKANIEFLTKPFYGGKKHRVTCEIFAGAEKKPYYTAQGE 423
           +ELG  V + C +T  +A+IEF  K F  G  + +  ++   +  +  Y   G+
Sbjct: 219 LELGDHVTVRCPKTDLQADIEFKVKGFISGTYNSIAGKVKRVSTGEVLYKISGK 272


>SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 388

 Score = 49.6 bits (113), Expect = 2e-07
 Identities = 25/69 (36%), Positives = 36/69 (52%)
 Frame = +2

Query: 20  DQLSFVAEQVSHHPPISAFYAEHVNKRIQFEAWVWTKSKFLGLSIGVHNIGKGTVTLIDL 199
           +     +EQVSHHPPI+A++  +    ++ E +   KS F G  I V  IG   + L   
Sbjct: 130 EDTELTSEQVSHHPPITAYHIYNKKAGVRLEGYNGHKSGFSGPQIHVKQIGHARLILEPH 189

Query: 200 GEEYTLTFP 226
            E Y +TFP
Sbjct: 190 NEVYYITFP 198


>SPBC2F12.05c |||sterol binding ankyrin repeat
            protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 47.2 bits (107), Expect = 1e-06
 Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
 Frame = +2

Query: 8    WCSPDQ-LSFVAEQVSHHPPISAFYAEHVNKRIQFEAWVWTKSKFLGLSIGVHNIG 172
            +C P +   F+ EQVSHHPP+ A Y+E  N +   E+ V  KSKF G S  +  +G
Sbjct: 1024 FCHPQRGFRFIVEQVSHHPPVGAAYSESANWKYYGESSV--KSKFYGKSFDISPLG 1077


>SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 399

 Score = 39.5 bits (88), Expect = 2e-04
 Identities = 24/72 (33%), Positives = 35/72 (48%)
 Frame = +2

Query: 14  SPDQLSFVAEQVSHHPPISAFYAEHVNKRIQFEAWVWTKSKFLGLSIGVHNIGKGTVTLI 193
           S  ++   AEQVSHH P SA +       I  +     +S F G ++ V+ +G+  V L 
Sbjct: 126 SKGKVELTAEQVSHHGPESAAHVVCKEAGITVDTHNKYRSGFSGRTVYVNQLGQLRVHLE 185

Query: 194 DLGEEYTLTFPN 229
              E Y +T PN
Sbjct: 186 KYNETYYITLPN 197


>SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 39.1 bits (87), Expect = 3e-04
 Identities = 28/83 (33%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
 Frame = +2

Query: 14  SPDQLSFVAEQVSHHPPISAFYAEHVNKRIQFEAWVWTKSKFLGLSIGV--HNIGKGTVT 187
           S   + F+AEQ SHHP +SAFY    +K I+          F G S  V   ++ KG   
Sbjct: 240 SKHSIVFMAEQTSHHPAVSAFYVTCPSKGIEVYGQDQIAVGFTGTSFKVCAGDLNKGVYV 299

Query: 188 LIDL--GEEYTLTFPNGYGTSIL 250
             +    EEY  T P+     IL
Sbjct: 300 RFNKRDNEEYLCTHPSASVGGIL 322


>SPCC1672.01 |||histidinol-phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 306

 Score = 27.9 bits (59), Expect = 0.69
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
 Frame = -1

Query: 217 QSVLLSEIDERDRALADVVDSYGQAEEFALRPHPGFE-LDAFV-DVLRVERRYGRMVGHL 44
           QS   +E   RDR    V D Y   EE  L+P   F+  D +V +  R+++ YG  +  L
Sbjct: 33  QSFSFTEHTPRDR----VEDLY--PEELHLQPEDLFKTFDEYVNEARRLKQNYGDQINIL 86

Query: 43  LGHERQLVR 17
           +G E + +R
Sbjct: 87  IGAETEYIR 95


>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 27.5 bits (58), Expect = 0.91
 Identities = 16/34 (47%), Positives = 17/34 (50%)
 Frame = -1

Query: 196 IDERDRALADVVDSYGQAEEFALRPHPGFELDAF 95
           ID   R L   V   G   E AL+ H GFE DAF
Sbjct: 268 IDAATRKLFVYVSQDGYYWEEALKFHKGFEFDAF 301


>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 710

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +2

Query: 158 VHNIGKGTVTLIDLGEEYTLTFPNGYGTSILTDRGSNWAALWSSSAC 298
           V + G+  + L  +G   T+T  N +    L ++ SN  A+WS + C
Sbjct: 73  VWSTGEEELRLFSIGFSTTITEWNLHTGKPLVNQDSNAGAIWSIAIC 119


>SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = -2

Query: 231 PLGNVKVYSSPRSMSVTVPLPMLWTPMDRPRNLLFVHTQASNWMRLLTCSA 79
           P   V V S+P S    +P+     PM    N+   H QASN  R LT ++
Sbjct: 236 PSTPVSVGSTPPSTPSVLPIAKQLAPM----NVCKAHIQASNQSRTLTTAS 282


>SPBC26H8.09c |snf59||SWI/SNF complex subunit
           Snf59|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 515

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 9/29 (31%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
 Frame = -1

Query: 208 LLSEIDERDRALADVVDSYGQ-AEEFALR 125
           +  +I+++D+ +++V+D+YG+ A+ F  R
Sbjct: 301 ITEKIEDKDKYISEVIDTYGKLADGFEYR 329


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 12/76 (15%)
 Frame = +3

Query: 228 MVTAHQY*RTVD--RTGRLCGHRVRA-------NRPQSQ---HRVPNEAILRWQEAQGDL 371
           ++  +QY R+ +  +T +LCG   R        N    Q    R   E ++ W+  +   
Sbjct: 641 IIQQNQYNRSTNARKTSQLCGREARRWQFRTIKNNKDMQTKAKRAMRETMVFWKRNERVE 700

Query: 372 RDIRRR*EEAVLHRAR 419
           RD+R++ E   L RA+
Sbjct: 701 RDLRKKAEREALDRAK 716


>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 179

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 274 GSVVIECVQTGHKAN 318
           GS+   C QTGHKA+
Sbjct: 35  GSICYNCNQTGHKAS 49


>SPBC947.13 |rba50||RNA polymerase II associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 14/63 (22%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
 Frame = +2

Query: 50  SHHPPISAFYAEHVNKRIQFEAWVWTKSKFLGLSIGVHNIG----KGTVTLIDLGEEYTL 217
           S+HP + + +A  +    + E    ++S+ + ++ G+H+ G        TL++L      
Sbjct: 311 SYHPSVESLHAHEIRFGFKGEIITPSQSQTIPVNEGLHHHGDAPFSAGYTLVELAHLLRS 370

Query: 218 TFP 226
           +FP
Sbjct: 371 SFP 373


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 8/52 (15%), Positives = 25/52 (48%)
 Frame = +1

Query: 220 IPQWLRHININGPWIELGGSVVIECVQTGHKANIEFLTKPFYGGKKHRVTCE 375
           +PQ +    + GP + + G +++E +     + I +  +     + +++ C+
Sbjct: 531 LPQLIMRERLQGPVVSIIGDILLEWIHAAKSSYINYAKQFPLADETYKLECQ 582


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,946,003
Number of Sequences: 5004
Number of extensions: 41438
Number of successful extensions: 133
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)