Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0122
(424 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50973| Best HMM Match : Oxysterol_BP (HMM E-Value=5.2e-09) 100 1e-21
SB_22051| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 3e-11
SB_37277| Best HMM Match : Oxysterol_BP (HMM E-Value=0) 42 3e-04
SB_31535| Best HMM Match : Oxysterol_BP (HMM E-Value=1.6e-08) 38 0.003
SB_32768| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.23
SB_18829| Best HMM Match : Filament_head (HMM E-Value=5.6) 28 3.7
SB_25571| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.7
SB_36730| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.8
SB_29559| Best HMM Match : zf-CCHC (HMM E-Value=0.0015) 27 4.8
SB_48559| Best HMM Match : Peptidase_A17 (HMM E-Value=2e-38) 27 6.4
SB_43580| Best HMM Match : DNA_primase_S (HMM E-Value=5.9) 27 6.4
SB_42598| Best HMM Match : CtaG_Cox11 (HMM E-Value=0) 27 6.4
SB_37717| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.4
SB_33630| Best HMM Match : DIRP (HMM E-Value=5.9) 27 6.4
SB_30413| Best HMM Match : WSC (HMM E-Value=2.4) 27 6.4
SB_3069| Best HMM Match : zf-C2H2 (HMM E-Value=1e-06) 27 6.4
SB_33253| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.4
SB_22477| Best HMM Match : E-MAP-115 (HMM E-Value=0.7) 27 6.4
SB_38582| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_22906| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_40993| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_3438| Best HMM Match : RVT_1 (HMM E-Value=1.3e-30) 27 8.5
>SB_50973| Best HMM Match : Oxysterol_BP (HMM E-Value=5.2e-09)
Length = 529
Score = 99.5 bits (237), Expect = 1e-21
Identities = 44/76 (57%), Positives = 56/76 (73%)
Frame = +2
Query: 26 LSFVAEQVSHHPPISAFYAEHVNKRIQFEAWVWTKSKFLGLSIGVHNIGKGTVTLIDLGE 205
L FVAEQ+SHHPP+S FYAE K+I A +WTKSKF G+SIGV N+G+ +TL++ E
Sbjct: 292 LRFVAEQISHHPPVSGFYAECPRKKICLNAHIWTKSKFYGMSIGVANVGEAVITLLEHEE 351
Query: 206 EYTLTFPNGYGTSILT 253
EY TFP+ + SILT
Sbjct: 352 EYHFTFPSAFCRSILT 367
Score = 66.9 bits (156), Expect = 6e-12
Identities = 31/71 (43%), Positives = 40/71 (56%)
Frame = +1
Query: 211 HFDIPQWLRHININGPWIELGGSVVIECVQTGHKANIEFLTKPFYGGKKHRVTCEIFAGA 390
HF P + PW+ELGG + I C +TG+ A++ F TKPFYGGK HRVT E+ +
Sbjct: 354 HFTFPSAFCRSILTFPWVELGGKLHITCPKTGYNASVTFHTKPFYGGKLHRVTGEVKNAS 413
Query: 391 EKKPYYTAQGE 423
K GE
Sbjct: 414 TGKVICKVAGE 424
>SB_22051| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 821
Score = 64.5 bits (150), Expect = 3e-11
Identities = 32/73 (43%), Positives = 40/73 (54%)
Frame = +2
Query: 32 FVAEQVSHHPPISAFYAEHVNKRIQFEAWVWTKSKFLGLSIGVHNIGKGTVTLIDLGEEY 211
FV+EQVSHHPP+SAFY + + KSKF G S G T+ L+ GEEY
Sbjct: 402 FVSEQVSHHPPVSAFYVSNRQDGFVINGAILAKSKFYGNSSSAILDGAATLALLRFGEEY 461
Query: 212 TLTFPNGYGTSIL 250
T+T P + IL
Sbjct: 462 TMTMPYAHCKGIL 474
Score = 35.1 bits (77), Expect = 0.024
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +1
Query: 262 IELGGSVVIECVQTGHKANIEFLTKPFY--GGKKHRVTCEIFAGAE 393
+ELGG+V I C + +A IEF KPF+ G+ + + +I G E
Sbjct: 480 MELGGTVTINCGEDRLQAEIEFKLKPFWKKSGESNYIAGKIIMGKE 525
>SB_37277| Best HMM Match : Oxysterol_BP (HMM E-Value=0)
Length = 926
Score = 41.5 bits (93), Expect = 3e-04
Identities = 26/60 (43%), Positives = 31/60 (51%)
Frame = +2
Query: 35 VAEQVSHHPPISAFYAEHVNKRIQFEAWVWTKSKFLGLSIGVHNIGKGTVTLIDLGEEYT 214
+AEQVSHHPP SAF+AEH K F SKF G + + G + I G YT
Sbjct: 633 LAEQVSHHPPASAFHAEH--KDWIFWQEFSATSKFRGKYLQIIPQGIAHLKFIKSGNHYT 690
>SB_31535| Best HMM Match : Oxysterol_BP (HMM E-Value=1.6e-08)
Length = 836
Score = 38.3 bits (85), Expect = 0.003
Identities = 25/52 (48%), Positives = 28/52 (53%)
Frame = +2
Query: 35 VAEQVSHHPPISAFYAEHVNKRIQFEAWVWTKSKFLGLSIGVHNIGKGTVTL 190
VAEQVSHHPPI+A E + F V K KF G + V KG VTL
Sbjct: 76 VAEQVSHHPPITALQCE--SDDFIFHVTVQPKLKFWGKGVEVQ--PKGMVTL 123
>SB_32768| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1393
Score = 31.9 bits (69), Expect = 0.23
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 11 CSPDQLSFVAEQVSHHPPISAFYAEHVNKRIQFE 112
C D+L + E+V P +Y +H+NK+ QFE
Sbjct: 325 CDDDELPYGWEKVDD-PKYGTYYIDHINKKTQFE 357
>SB_18829| Best HMM Match : Filament_head (HMM E-Value=5.6)
Length = 153
Score = 27.9 bits (59), Expect = 3.7
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 190 HRSRRGVHFDIPQWLRHINI-NGPWIELGGSVVIECVQ 300
++S RG H I + N NGPW E GG V+++ Q
Sbjct: 82 NKSIRGDHGIIYLIIEVCNAWNGPWKEEGGKVIVDVAQ 119
>SB_25571| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 127
Score = 27.9 bits (59), Expect = 3.7
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 10/82 (12%)
Frame = +2
Query: 2 VPWCSPDQLSFVAEQVSHHPPIS-AFYAEHVNKRIQFEAWVWTKSKFLGLSIGVHNI--- 169
+P C+P L F++ H PP + + K + + W+ T ++ L I H
Sbjct: 17 LPTCTPVTLPFISCTPVHPPPNAIVLTLTPLKKSLVYLTWIRTLARLLEKRIPYHCAIAP 76
Query: 170 -----GKGTVTLIDLGEE-YTL 217
GK T+ LI LG++ YT+
Sbjct: 77 LSRYQGKTTLYLIRLGKQGYTV 98
>SB_36730| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 127
Score = 27.5 bits (58), Expect = 4.8
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 10/82 (12%)
Frame = +2
Query: 2 VPWCSPDQLSFVAEQVSHHPPIS-AFYAEHVNKRIQFEAWVWTKSKFLGLSIGVHNI--- 169
+P C+P L F++ H PP + + K + + W+ T ++ L H
Sbjct: 17 LPTCTPVTLPFISCTPVHSPPNAIVLTLTFLKKSLVYLTWIRTLARLLEKRSPYHGAITP 76
Query: 170 -----GKGTVTLIDLGEE-YTL 217
GK T+ LI LG++ YT+
Sbjct: 77 LSRYQGKTTLYLIRLGKQGYTV 98
>SB_29559| Best HMM Match : zf-CCHC (HMM E-Value=0.0015)
Length = 858
Score = 27.5 bits (58), Expect = 4.8
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +1
Query: 127 EEQIP-RPVHRSPQHRQGHGHAHRSRRG 207
+ ++P P + + H GHGHAH G
Sbjct: 28 DREVPLSPENHTQDHTHGHGHAHPQNSG 55
>SB_48559| Best HMM Match : Peptidase_A17 (HMM E-Value=2e-38)
Length = 1541
Score = 27.1 bits (57), Expect = 6.4
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 142 RPVHRSPQHRQGHGHAHRSRRGVHFDI 222
R H+ QH QGHG H + R + +
Sbjct: 987 RHYHQRQQHHQGHGMTHNAIRQAGYHV 1013
>SB_43580| Best HMM Match : DNA_primase_S (HMM E-Value=5.9)
Length = 252
Score = 27.1 bits (57), Expect = 6.4
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +1
Query: 70 GVLRGARQQ-THPVRSLGVDEEQIPRPVHRSPQHRQGHGHAHRSRRGVHFDI 222
G RG Q T + L + ++ P+P+HRSP+ G ++ R + F +
Sbjct: 95 GFHRGCYQNFTKNLDRLKNNNQKEPKPIHRSPRKLSGTFGVEKASREMAFTV 146
>SB_42598| Best HMM Match : CtaG_Cox11 (HMM E-Value=0)
Length = 1498
Score = 27.1 bits (57), Expect = 6.4
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 182 VTLIDLGEEYTLTFPNGYGTSILTDRGSNWAALWSSSACK 301
V L+ E+Y LT P + + R S W+A WS C+
Sbjct: 1048 VWLVREDEQYRLTCPLMWLAASADSRVSVWSADWSKDFCE 1087
>SB_37717| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 27.1 bits (57), Expect = 6.4
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +1
Query: 70 GVLRGARQQ-THPVRSLGVDEEQIPRPVHRSPQHRQGHGHAHRSRRGVHFDI 222
G RG Q T + L + ++ P+P+HRSP+ G ++ R + F +
Sbjct: 95 GFHRGCYQNFTKNLDRLKNNNQKEPKPIHRSPRKLSGTFGVEKASREMAFTV 146
>SB_33630| Best HMM Match : DIRP (HMM E-Value=5.9)
Length = 175
Score = 27.1 bits (57), Expect = 6.4
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +1
Query: 70 GVLRGARQQ-THPVRSLGVDEEQIPRPVHRSPQHRQGHGHAHRSRRGVHFDI 222
G RG Q T + L + ++ P+P+HRSP+ G ++ R + F +
Sbjct: 95 GFHRGCYQNFTKNLDRLKNNNQKEPKPIHRSPRKLSGTFGVEKASREMAFTV 146
>SB_30413| Best HMM Match : WSC (HMM E-Value=2.4)
Length = 259
Score = 27.1 bits (57), Expect = 6.4
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 244 NINGPWIELGGSVVIECVQTGHKANIEFLTKPFYG 348
N+N W +L SVV EC + + N + F+G
Sbjct: 58 NLN--WTDLNSSVVEECARLAEQKNYSYFGVQFWG 90
>SB_3069| Best HMM Match : zf-C2H2 (HMM E-Value=1e-06)
Length = 625
Score = 27.1 bits (57), Expect = 6.4
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +1
Query: 91 QQTHPVRSLGVDEEQIPRPVHRSPQHRQ 174
+QTHP+R + P PVH H +
Sbjct: 448 RQTHPLRHFPYPPDSYPEPVHMQTIHHR 475
>SB_33253| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1383
Score = 27.1 bits (57), Expect = 6.4
Identities = 25/117 (21%), Positives = 48/117 (41%), Gaps = 2/117 (1%)
Frame = +1
Query: 55 PSSHIGVLRGARQQTHPVRSLGVDEEQI-PRPVHRSPQHRQGHGHAHRSRRGVHFDIPQW 231
P + +RG R+ H ++ ++ + PR +HR P + +G+ S G D+P
Sbjct: 762 PLEYYKFIRGVREP-HRKQNAELERPSLLPRAIHRGPVSKPSNGYV--SSAGTAIDLPIV 818
Query: 232 LRHININGPWIELGGSVVIE-CVQTGHKANIEFLTKPFYGGKKHRVTCEIFAGAEKK 399
+ G + +++ C T N E L + G+K ++ G K+
Sbjct: 819 PVQVRAKGHSFSVQTYALLDPCSNTSFCTN-EILKQLNIKGEKTTLSLTTLHGKNKR 874
>SB_22477| Best HMM Match : E-MAP-115 (HMM E-Value=0.7)
Length = 569
Score = 27.1 bits (57), Expect = 6.4
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +2
Query: 17 PDQLSFVAEQVSHHPPISAFYAEHVNK-RIQFEAWVWTKSKFLGLSIGVHNIG 172
PD+L ++ + PP SAF + N+ R F+ + TK L +S+G+H+ G
Sbjct: 243 PDKLEWMKDC----PPPSAFDQKQGNQARFTFDGSLVTKEADLPVSLGLHHHG 291
>SB_38582| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1438
Score = 26.6 bits (56), Expect = 8.5
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +1
Query: 52 PPSSHIGVLRGARQQTHPVRSLGVDEEQIPRPVHRSPQHRQGHG 183
P S+ I + R P++ L DEE +P+P+ +H +G
Sbjct: 631 PHSNDIQPVSPGRLFGLPLQDLCTDEEPVPKPIEELMRHMFRYG 674
>SB_22906| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 205
Score = 26.6 bits (56), Expect = 8.5
Identities = 18/66 (27%), Positives = 24/66 (36%), Gaps = 2/66 (3%)
Frame = -3
Query: 290 SMTTEPPSSIHGPLILMC--RNHWGMSKCTXXXXXXXXXXXXXXXXXLWTGRGICSSSTP 117
S T PSS PL + C R G+ WTG+G C ++T
Sbjct: 90 SDTPTSPSSKTLPLYVACHSRARGGLKPLCHQFTSGGECFDGHQYCKYWTGQGYCQTNTA 149
Query: 116 RLRTGC 99
+R C
Sbjct: 150 YMRLYC 155
>SB_40993| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 94
Score = 26.6 bits (56), Expect = 8.5
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +2
Query: 2 VPWCSPDQLSFVAEQVSHHPPIS-AFYAEHVNKRIQFEAWVWTKSKFL 142
+P C+P L F++ H PP + + K + + W+ T ++ L
Sbjct: 40 LPTCTPVTLPFISCTAVHSPPNAIVLTLTPLKKSLVYHTWIRTLARLL 87
>SB_3438| Best HMM Match : RVT_1 (HMM E-Value=1.3e-30)
Length = 1405
Score = 26.6 bits (56), Expect = 8.5
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -1
Query: 217 QSVLLSEIDERDRALADVVDSYGQAEEFALRPHPGFELDA 98
Q L EI++R +A A V +S A++ A P FE+D+
Sbjct: 1172 QRRLEREIEKRKKAEASVKESVVSAKKHAFLGGPDFEVDS 1211
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,857,102
Number of Sequences: 59808
Number of extensions: 357321
Number of successful extensions: 1185
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1176
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 801830705
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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