Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0122
         (424 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   1.9  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   1.9  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   3.3  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   5.7  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   5.7  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   7.5  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   7.5  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    20   10.0 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    20   10.0 
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            20   10.0 

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 18  RTSCRSWPSKCPT 56
           +  CRSW SK PT
Sbjct: 398 KNCCRSWLSKFPT 410


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 18  RTSCRSWPSKCPT 56
           +  CRSW SK PT
Sbjct: 398 KNCCRSWLSKFPT 410


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +1

Query: 166 HRQGHGHAH 192
           H  GHGH+H
Sbjct: 417 HTMGHGHSH 425


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 188 LIDLGEEYTLTFPNGYGTSILTDRGSNWAA 277
           +ID+ E+  +   N + T I TD    W A
Sbjct: 42  IIDVDEKNQILTTNCWVTQIWTDHHLKWNA 71


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -1

Query: 67  YGRMVGHLLGHERQLVRTAPR 5
           Y ++V H++ HE+ L   A +
Sbjct: 231 YSQIVSHVVNHEKALREQAKK 251


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -2

Query: 75  NADMGGWWDTCSATNDNWSGLHHG 4
           N  + G    CS   D  SG H+G
Sbjct: 100 NHPLSGSKHLCSICGDRASGKHYG 123


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -2

Query: 75  NADMGGWWDTCSATNDNWSGLHHG 4
           N  + G    CS   D  SG H+G
Sbjct: 100 NHPLSGSKHLCSICGDRASGKHYG 123


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = +2

Query: 116 WVWTKSKFLGLSIGVHNIGKGTVTLI 193
           W+W    FL     V   G G V L+
Sbjct: 165 WIWGDQGFLKKLGAVDIAGSGAVHLV 190


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 270 GRLCGHRVRAN 302
           G LC HR RAN
Sbjct: 533 GGLCPHRRRAN 543


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 8/26 (30%), Positives = 10/26 (38%)
 Frame = +1

Query: 151 HRSPQHRQGHGHAHRSRRGVHFDIPQ 228
           H S      HG  +      +FD PQ
Sbjct: 119 HMSGDRNDAHGTGNSRANTYNFDYPQ 144


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,338
Number of Sequences: 438
Number of extensions: 2957
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10873896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)