Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0121
(703 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 28 1.5
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 27 2.6
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ... 27 3.4
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr... 27 3.4
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 26 4.5
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar... 26 6.0
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 6.0
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual 25 7.9
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 7.9
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 25 7.9
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 25 7.9
>SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 283
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +1
Query: 541 ASLEWNVNCDIPNTDYAYSDVLGRCYKMYLTPMTWSEAYR 660
+S++W+ N + NTDY Y ++ C+ P+ + A R
Sbjct: 187 SSMDWSCNMTLCNTDYPY--LVNTCFNGTQYPVNCNSALR 224
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 521 LYARKHWLHSSGM*IVTFLTPTTHTAMYLADATRCI*P 634
+YA WL SG+ + + L +A+Y AD +C+ P
Sbjct: 873 IYANAQWLSYSGLSLESSLGLGFLSAVYHADRKKCLLP 910
>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 803
Score = 26.6 bits (56), Expect = 3.4
Identities = 8/17 (47%), Positives = 14/17 (82%)
Frame = +1
Query: 583 DYAYSDVLGRCYKMYLT 633
D+ S+++GRC+ MY+T
Sbjct: 420 DHPVSEIVGRCFVMYIT 436
>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 599
Score = 26.6 bits (56), Expect = 3.4
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +2
Query: 437 DSHNNEDCVVIHRNDGLMN-DDDCANLSHLYARKHWLHSSGM*IVTFLTPTTHT 595
D + E+ V+ +DG N D + S LY R H SS M T LTP + T
Sbjct: 253 DDDDEEEDEVVTDDDGTSNADSEVITASTLYER-HTAISSEMTSSTILTPPSLT 305
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 26.2 bits (55), Expect = 4.5
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Frame = +2
Query: 407 YNKWKPGEPNDSHNNEDCV-----VIHRNDGLMNDDDCANLSHLYARKHWLHSSGM*IVT 571
Y++WKPG+ NN + ++ N+G N+ N Y K SG +
Sbjct: 239 YSEWKPGQLAVLSNNSITLRQLLPCVNGNEGSANNSVFVNYEKKYPVKPNSQCSG---ID 295
Query: 572 FLTPTT 589
F TP+T
Sbjct: 296 FFTPST 301
>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
lipase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +3
Query: 135 ENKFFRKDYTYIESTESFYKIHTLYKKWVDAK 230
E KDYT E + F K +YKK D K
Sbjct: 5 EESEINKDYTVQEDLDEFAKYTCVYKKRHDEK 36
>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 773
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -3
Query: 644 QVIGVKYIL*HRPSTSLYA*SVLGMSQFTFHSSEASVFL 528
+V +IL + STS+Y S+ G+S ++ H S L
Sbjct: 268 EVQAPSHILMSKDSTSIYTISLEGLSIYSLHDESKSYML 306
>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 656
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/53 (28%), Positives = 21/53 (39%)
Frame = +2
Query: 449 NEDCVVIHRNDGLMNDDDCANLSHLYARKHWLHSSGM*IVTFLTPTTHTAMYL 607
+ D VVI DG + D K W H+ + T +T + MYL
Sbjct: 375 HNDPVVISDIDGTITKSDALGHMFTLIGKDWTHAGVAKLYTDITNNGYKIMYL 427
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +2
Query: 488 MNDDDCANLSHLYARKHWL 544
+NDD+ + + HL +RKH L
Sbjct: 3487 INDDNLSEIKHLKSRKHLL 3505
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -3
Query: 425 PASICYTRPLWRHHQQFRRLLWPSAMRSRY 336
P SICY + LWR ++ +L++ + + Y
Sbjct: 946 PGSICYNQRLWRRNRN-EKLIYRTRPLAEY 974
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -2
Query: 195 FCKSSQLIRYTYSPYGKTYFPVVH 124
FCK S+ R TY K Y+ +H
Sbjct: 471 FCKLSRTWRSTYEQCFKNYYETIH 494
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,008,463
Number of Sequences: 5004
Number of extensions: 64542
Number of successful extensions: 168
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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