Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0121
         (703 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_1069 + 10916376-10916448,10917331-10918031,10918222-109184...    29   4.7  
01_01_0335 - 2706916-2706984,2707062-2707825,2710014-2710053,271...    29   4.7  
05_01_0388 - 3036436-3036672,3037195-3037305,3037545-3037644,303...    28   6.2  
01_01_0585 - 4328725-4329030,4329333-4329551,4329752-4329820,432...    28   8.3  

>08_01_1069 +
           10916376-10916448,10917331-10918031,10918222-10918443,
           10918526-10919351,10919437-10919574,10920431-10920569,
           10920655-10920781,10921895-10921936,10922089-10922160,
           10922491-10922589,10922694-10922735,10922947-10923027,
           10923129-10923179,10923265-10923346,10923741-10923835,
           10924739-10924810,10924907-10925023,10925176-10925244,
           10925507-10925573,10925709-10925950
          Length = 1118

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/65 (27%), Positives = 27/65 (41%)
 Frame = +2

Query: 389 VSIMDVYNKWKPGEPNDSHNNEDCVVIHRNDGLMNDDDCANLSHLYARKHWLHSSGM*IV 568
           +S  +V   W PG   D     DCV++    G   +  C  +  +Y +   L +S    V
Sbjct: 186 ISRRNVSAVWPPG---DRALTLDCVILRNIPGFNGEGGCRPIFRIYGKDPLLATSNTPKV 242

Query: 569 TFLTP 583
            F TP
Sbjct: 243 LFSTP 247


>01_01_0335 -
           2706916-2706984,2707062-2707825,2710014-2710053,
           2710105-2710173,2710268-2710336
          Length = 336

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +2

Query: 242 NGGGSFFYPDDKFEFDAVTTYWNTSQPFEWISIGISSQMAKGVFETVDGVSIM 400
           +G G +  P   F F+ VT    T++ ++W+   I++Q   G    V   SIM
Sbjct: 247 SGNGGYQIPRG-FLFNIVTCANYTTEIYQWLGFNIATQTVAGYIFLVVAASIM 298


>05_01_0388 -
           3036436-3036672,3037195-3037305,3037545-3037644,
           3037755-3037804,3037888-3038178,3038318-3038470
          Length = 313

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 10/53 (18%)
 Frame = +2

Query: 407 YNKWKPGEPNDSHN-----NEDCVVI--HRNDGLMN---DDDCANLSHLYARK 535
           +NK KP +P+ SHN      ED V +  + N   MN   +D+C N  + YA++
Sbjct: 54  HNKSKPNDPSSSHNVFHSVEEDNVALDEYWNIVQMNFQTEDECYNFYNSYAKR 106


>01_01_0585 - 4328725-4329030,4329333-4329551,4329752-4329820,
            4329925-4331469,4332220-4332429,4332563-4332713,
            4332791-4333031,4333898-4333956,4334379-4334653,
            4334813-4334955,4335034-4335088,4335181-4335258,
            4335351-4335478,4335533-4335575
          Length = 1173

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +1

Query: 283  IRCCDHLLEHVTTLRMDQYRDLIADGQ 363
            IRC  H   HV  L M   RD++  GQ
Sbjct: 1079 IRCLSHPSAHVRALSMSVLRDILNSGQ 1105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,746,407
Number of Sequences: 37544
Number of extensions: 393443
Number of successful extensions: 953
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)