Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0120
         (442 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5KTL5 Cluster: Putative uncharacterized protein; n=1; ...    37   0.17 
UniRef50_Q17003 Cluster: Putative reverse transcriptase; n=29; C...    37   0.22 
UniRef50_A0DAI2 Cluster: Chromosome undetermined scaffold_43, wh...    33   3.6  
UniRef50_Q8I3C6 Cluster: Putative uncharacterized protein PFI010...    32   4.7  
UniRef50_Q9C4A8 Cluster: Pol-like protein Pol-1; n=3; Tricholoma...    32   4.7  
UniRef50_UPI00015B48E8 Cluster: PREDICTED: similar to Polyprotei...    32   6.3  
UniRef50_Q38FU7 Cluster: Putative uncharacterized protein; n=1; ...    31   8.3  

>UniRef50_Q5KTL5 Cluster: Putative uncharacterized protein; n=1;
           Bombyx mori|Rep: Putative uncharacterized protein -
           Bombyx mori (Silk moth)
          Length = 208

 Score = 37.1 bits (82), Expect = 0.17
 Identities = 16/32 (50%), Positives = 23/32 (71%)
 Frame = +3

Query: 21  DERFVVYRCDRNYNSRNDSLGGGVLIAVRRGI 116
           D+R++VYR DR+ +  +   GGGVL+AV R I
Sbjct: 1   DDRYIVYRRDRSSSGNSKKDGGGVLLAVSRDI 32


>UniRef50_Q17003 Cluster: Putative reverse transcriptase; n=29;
           Culicidae|Rep: Putative reverse transcriptase -
           Anopheles gambiae (African malaria mosquito)
          Length = 1049

 Score = 36.7 bits (81), Expect = 0.22
 Identities = 18/30 (60%), Positives = 22/30 (73%)
 Frame = +3

Query: 15  LFDERFVVYRCDRNYNSRNDSLGGGVLIAV 104
           LF+  F VYRCDR+  S + S GGGVL+AV
Sbjct: 125 LFNNNFSVYRCDRSL-SGSSSRGGGVLLAV 153


>UniRef50_A0DAI2 Cluster: Chromosome undetermined scaffold_43, whole
           genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_43,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 268

 Score = 32.7 bits (71), Expect = 3.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 108 YAQQ*VPRHPKNHFESYSSDRNGKQQNAHQTTPSHK 1
           Y ++   +HPKNH   YS D N + +  H    S+K
Sbjct: 8   YQEKNRTQHPKNHNPRYSDDNNSQNKQGHNFRDSYK 43


>UniRef50_Q8I3C6 Cluster: Putative uncharacterized protein PFI0105c;
           n=1; Plasmodium falciparum 3D7|Rep: Putative
           uncharacterized protein PFI0105c - Plasmodium falciparum
           (isolate 3D7)
          Length = 610

 Score = 32.3 bits (70), Expect = 4.7
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = -1

Query: 406 IIQESSRSINTDQLPRSIPYIEIADAQKFVTGISNNCVRNILKKTNFIFKLEE 248
           +  E + ++  +++    PY++IA +      +SNN   N   KTN I  LE+
Sbjct: 177 LYDEKTENVQIEKVVNRPPYVDIAKSLNEDDNVSNNSYDNFDMKTNIISDLEQ 229


>UniRef50_Q9C4A8 Cluster: Pol-like protein Pol-1; n=3; Tricholoma
           matsutake|Rep: Pol-like protein Pol-1 - Tricholoma
           matsutake (Matsutake mushroom) (Tricholoma nauseosum)
          Length = 445

 Score = 32.3 bits (70), Expect = 4.7
 Identities = 12/25 (48%), Positives = 20/25 (80%)
 Frame = +2

Query: 293 DTIITNPGDEFLCVGDFNIRNASWE 367
           ++++T P   F+C GDFN+R+ASW+
Sbjct: 143 ESVMTIPRLHFMC-GDFNVRHASWD 166


>UniRef50_UPI00015B48E8 Cluster: PREDICTED: similar to Polyprotein,
           putative; n=1; Nasonia vitripennis|Rep: PREDICTED:
           similar to Polyprotein, putative - Nasonia vitripennis
          Length = 813

 Score = 31.9 bits (69), Expect = 6.3
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = +3

Query: 9   SELFDERFVVYRCDRNYNSRNDSLGGGVLIAVRRGI 116
           S+L    + ++R DRN ++   S GGGVLIAV+  I
Sbjct: 697 SKLGLRNYSIFRYDRNLSASAVSRGGGVLIAVKSSI 732


>UniRef50_Q38FU7 Cluster: Putative uncharacterized protein; n=1;
           Trypanosoma brucei|Rep: Putative uncharacterized protein
           - Trypanosoma brucei
          Length = 276

 Score = 31.5 bits (68), Expect = 8.3
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = +1

Query: 13  SCLMSVLLFTVAIGTITLEMILWVAGYLLLCVEELPFLI*PVSLPTETDQL 165
           +CL+ VLL   A  T+ L  +    G+L L   E   +  PVS+PTE + +
Sbjct: 158 ACLVDVLLVPPAPRTLVLRALNGAKGFLSLVDVEDTVIATPVSVPTERESV 208


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 388,313,762
Number of Sequences: 1657284
Number of extensions: 6660558
Number of successful extensions: 19089
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 18498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19085
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 22340008747
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)