Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0120
         (442 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    27   1.7  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    26   2.2  
SPCC622.14 |||GTPase activating protein |Schizosaccharomyces pom...    25   3.9  
SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1 |Schizosacch...    24   9.0  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    24   9.0  
SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr 2|||Ma...    24   9.0  
SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    24   9.0  

>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1184

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 173  NNIS*SVSVGRETG*IKNGNSSTHSNKYPATQRIISRVIVP 51
            NN +  V+V  + G  +NG+ + HSN    TQ  ++   VP
Sbjct: 1076 NNSTKPVAVTSKNGHSRNGSHAAHSNNVIGTQPHVNVSAVP 1116


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +2

Query: 266 EIGFFEDISDTIITNPGDEFLCVGDFNI---RNASWELIGVDGPAR 394
           EIGFF + S T ++NP     C+ D NI   RN    +IG  G  +
Sbjct: 610 EIGFF-NASLTWVSNPSPGDFCLRDLNIVFPRNKLSIVIGPTGSGK 654


>SPCC622.14 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 441 LERPKTSESHRSSFKSLAGPSTPISSQEA 355
           ++RPK+  SH S   S   P+ P  S+EA
Sbjct: 122 VDRPKSVSSHASVTSSSTVPTIPSVSKEA 150


>SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 158 SVSVGRETG*IKNGNSSTHSNKYPATQRIISRVIVP 51
           + S+ R +  +K+GN    SNK  AT  +  R   P
Sbjct: 13  AASIARSSVNVKSGNRHLSSNKKSATSALEERASRP 48


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -2

Query: 111 LYAQQ*VPRHPKNHFESYSSDRNGKQQN 28
           L AQ        +H E   SDRNG+ QN
Sbjct: 600 LIAQNLSQSEVASHIEKIPSDRNGQLQN 627


>SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 413

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 9/39 (23%), Positives = 23/39 (58%)
 Frame = -3

Query: 128 IKNGNSSTHSNKYPATQRIISRVIVPIATVNNKTLIKQL 12
           I+  N S + N Y +  +I+    +P+++ +N+  ++Q+
Sbjct: 125 IRGFNPSLNVNPYESWAKILDCGDIPVSSYDNQLAVRQM 163


>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 6/23 (26%), Positives = 15/23 (65%)
 Frame = +2

Query: 350 RNASWELIGVDGPARLLNDDRWD 418
           +   + L+  DG  ++++D++WD
Sbjct: 482 KTEEYRLLDADGTIKVVDDEKWD 504


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,646,799
Number of Sequences: 5004
Number of extensions: 29310
Number of successful extensions: 97
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)