Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0120
         (442 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0559 - 25610474-25610951,25611149-25611890,25612355-256127...    29   1.3  
12_02_1286 - 27555143-27555191,27555290-27555511,27555911-275561...    28   3.8  
04_04_0581 + 26365806-26366234                                         27   6.7  

>03_05_0559 -
           25610474-25610951,25611149-25611890,25612355-25612744,
           25613041-25613099,25613186-25613326,25613449-25613545,
           25614999-25615185
          Length = 697

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -2

Query: 90  PRHPKNHFESYSSDRNGKQQNAHQTTPSHK 1
           P+ P+   +S SS+RN +  ++H T PS+K
Sbjct: 562 PKEPEPANQSRSSERNQRLSSSHGTDPSYK 591


>12_02_1286 -
           27555143-27555191,27555290-27555511,27555911-27556162,
           27556683-27557062,27557202-27557311,27557864-27558033,
           27558236-27558444,27558528-27558617,27559125-27559264,
           27559356-27559463,27559626-27559716,27560736-27560852,
           27561497-27561767,27561892-27562193,27562400-27562469,
           27563464-27563702,27564613-27564846,27564943-27565179,
           27565276-27565734
          Length = 1249

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 14/58 (24%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
 Frame = -3

Query: 170 NIS*SVSVGR--ETG*IKNGNSSTHSNKYPATQRIISRVIVPIATVNNKTLIKQLRVI 3
           N++ +V++G+  +   +++ N+     KY   QR+  +  +P+ +V  K +I++LR +
Sbjct: 577 NLAVTVAMGKFMDAVVVEDENTGKECIKYLKEQRLPPQTFIPLQSVRVKPIIEKLRTL 634


>04_04_0581 + 26365806-26366234
          Length = 142

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 4  MTRSCLMSVLLFTVAIGTITLEMILWVAG 90
          MTRSC + VLL  VA+G   L +    +G
Sbjct: 1  MTRSCFLIVLLLAVAMGGSKLSLAAGESG 29


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,040,591
Number of Sequences: 37544
Number of extensions: 165926
Number of successful extensions: 459
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)