Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0120
(442 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47673| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.56
SB_18197| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.56
SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.97
SB_52616| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_28024| Best HMM Match : RVT_1 (HMM E-Value=0) 29 2.2
SB_53367| Best HMM Match : RVT_1 (HMM E-Value=0) 28 3.0
SB_26059| Best HMM Match : Exo_endo_phos (HMM E-Value=4.5e-09) 28 3.0
SB_18309| Best HMM Match : Exo_endo_phos (HMM E-Value=2.3e-09) 28 3.0
SB_16599| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0019) 28 3.0
SB_12291| Best HMM Match : Exo_endo_phos (HMM E-Value=1.8e-09) 28 3.0
SB_52564| Best HMM Match : Exo_endo_phos (HMM E-Value=3.2e-09) 28 3.0
SB_31078| Best HMM Match : PHD (HMM E-Value=7.4e-09) 28 3.0
SB_11838| Best HMM Match : RVT_1 (HMM E-Value=0) 28 3.0
SB_7003| Best HMM Match : Exo_endo_phos (HMM E-Value=4.1e-09) 28 3.9
SB_14911| Best HMM Match : Amelogenin (HMM E-Value=1.7) 27 5.2
SB_31174| Best HMM Match : LIM_bind (HMM E-Value=0) 27 6.9
SB_35452| Best HMM Match : UK (HMM E-Value=5.7) 27 9.1
SB_7296| Best HMM Match : PHD (HMM E-Value=0.0013) 27 9.1
SB_11923| Best HMM Match : Toxin_3 (HMM E-Value=0.32) 27 9.1
SB_8547| Best HMM Match : Amelogenin (HMM E-Value=8.1) 27 9.1
>SB_47673| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1480
Score = 30.7 bits (66), Expect = 0.56
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +3
Query: 6 DSELFDERFVVYRCDRNYNSRNDSLGGGVLIAVR 107
D E+F + +YR DRN D GGGVLIA +
Sbjct: 1012 DEEVFHSGYTIYRRDRN-----DREGGGVLIAAK 1040
>SB_18197| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1153
Score = 30.7 bits (66), Expect = 0.56
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +3
Query: 6 DSELFDERFVVYRCDRNYNSRNDSLGGGVLIAVR 107
D E+F + +YR DRN D GGGVLIA +
Sbjct: 793 DEEVFHSGYTIYRRDRN-----DREGGGVLIAAK 821
>SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3142
Score = 29.9 bits (64), Expect = 0.97
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +3
Query: 66 RNDSLGGGVLIAVRRGITVFNLTCLPSN 149
R D+ GGGV IAV+ GI+ F L +N
Sbjct: 393 RRDTGGGGVFIAVKSGISAFERQDLTTN 420
>SB_52616| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1855
Score = 28.7 bits (61), Expect = 2.2
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +3
Query: 15 LFDERFVVYRCDRNYNSRNDSLGGGVLIAVRRGIT 119
+F +++VV+R DR + GGGV IAVR +T
Sbjct: 1094 VFPDKYVVFRKDRTVS------GGGVFIAVREDLT 1122
>SB_28024| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 968
Score = 28.7 bits (61), Expect = 2.2
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +3
Query: 6 DSELFDERFVVYRCDRNYNSRNDSLGGGVLIAVR 107
+ E+F + +YR DRN D GGGVLIA +
Sbjct: 148 NEEVFHSGYTIYRRDRN-----DREGGGVLIAAK 176
>SB_53367| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1025
Score = 28.3 bits (60), Expect = 3.0
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +3
Query: 15 LFDERFVVYRCDRNYNSRNDSLGGGVLIAVRRGIT 119
+F E + VYR DR + GGGV IAVR +T
Sbjct: 267 IFPENYEVYRRDRTAS------GGGVFIAVRNDLT 295
>SB_26059| Best HMM Match : Exo_endo_phos (HMM E-Value=4.5e-09)
Length = 334
Score = 28.3 bits (60), Expect = 3.0
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +3
Query: 15 LFDERFVVYRCDRNYNSRNDSLGGGVLIAVRRGIT 119
+F E + VYR DR + GGGV IAVR +T
Sbjct: 83 IFPENYEVYRRDRTAS------GGGVFIAVRNDLT 111
>SB_18309| Best HMM Match : Exo_endo_phos (HMM E-Value=2.3e-09)
Length = 895
Score = 28.3 bits (60), Expect = 3.0
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +3
Query: 15 LFDERFVVYRCDRNYNSRNDSLGGGVLIAVRRGIT 119
+F E + VYR DR + GGGV IAVR +T
Sbjct: 267 IFPENYEVYRRDRTAS------GGGVFIAVRNDLT 295
>SB_16599| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0019)
Length = 252
Score = 28.3 bits (60), Expect = 3.0
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +3
Query: 15 LFDERFVVYRCDRNYNSRNDSLGGGVLIAVRRGIT 119
+F E + VYR DR + GGGV IAVR +T
Sbjct: 89 IFPENYEVYRRDRTAS------GGGVFIAVRNDLT 117
>SB_12291| Best HMM Match : Exo_endo_phos (HMM E-Value=1.8e-09)
Length = 843
Score = 28.3 bits (60), Expect = 3.0
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +3
Query: 15 LFDERFVVYRCDRNYNSRNDSLGGGVLIAVRRGIT 119
+F E + VYR DR + GGGV IAVR +T
Sbjct: 102 IFPENYEVYRRDRTAS------GGGVFIAVRNDLT 130
>SB_52564| Best HMM Match : Exo_endo_phos (HMM E-Value=3.2e-09)
Length = 748
Score = 28.3 bits (60), Expect = 3.0
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +3
Query: 15 LFDERFVVYRCDRNYNSRNDSLGGGVLIAVRRGIT 119
+F E + VYR DR + GGGV IAVR +T
Sbjct: 170 IFPENYEVYRRDRTAS------GGGVFIAVRNDLT 198
>SB_31078| Best HMM Match : PHD (HMM E-Value=7.4e-09)
Length = 241
Score = 28.3 bits (60), Expect = 3.0
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +3
Query: 15 LFDERFVVYRCDRNYNSRNDSLGGGVLIAVRRGIT 119
+F E + VYR DR + GGGV IAVR +T
Sbjct: 170 IFPENYEVYRRDRTAS------GGGVFIAVRNDLT 198
>SB_11838| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1009
Score = 28.3 bits (60), Expect = 3.0
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +3
Query: 15 LFDERFVVYRCDRNYNSRNDSLGGGVLIAVRRGIT 119
+F E + VYR DR + GGGV IAVR +T
Sbjct: 140 IFPENYEVYRRDRTAS------GGGVFIAVRNDLT 168
>SB_7003| Best HMM Match : Exo_endo_phos (HMM E-Value=4.1e-09)
Length = 378
Score = 27.9 bits (59), Expect = 3.9
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +3
Query: 15 LFDERFVVYRCDRNYNSRNDSLGGGVLIAVRRGIT 119
+F E + VYR DR + GGGV +AVR +T
Sbjct: 96 IFPENYEVYRRDRTAS------GGGVFVAVRNDLT 124
>SB_14911| Best HMM Match : Amelogenin (HMM E-Value=1.7)
Length = 326
Score = 27.5 bits (58), Expect = 5.2
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = -2
Query: 90 PRHPKNHFESYSSDRNGKQQNAHQTTPS 7
PRH H + SS G H T+PS
Sbjct: 225 PRHSSPHHRAQSSFERGSGSEGHSTSPS 252
>SB_31174| Best HMM Match : LIM_bind (HMM E-Value=0)
Length = 609
Score = 27.1 bits (57), Expect = 6.9
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = -2
Query: 435 RPKTSESHRSSFKSLAGPSTPISSQEAFLILKSPTHKNSS 316
RP+T +SS S STP SS + KSPT N S
Sbjct: 541 RPRTRRKRKSS--STPNASTPTSSGNSHSKKKSPTASNFS 578
>SB_35452| Best HMM Match : UK (HMM E-Value=5.7)
Length = 223
Score = 26.6 bits (56), Expect = 9.1
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 142 GRQVKLKTVIPLRTAISTPPPKESFRE 62
GRQ K + V P++T I PK+ F E
Sbjct: 75 GRQAKKQKVEPIKTKIDKEKPKQLFWE 101
>SB_7296| Best HMM Match : PHD (HMM E-Value=0.0013)
Length = 873
Score = 26.6 bits (56), Expect = 9.1
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = +3
Query: 18 FDERFVVYRCDRNYNSRNDSLGGGVLIAVRRGITVFNLTCLPSNRN 155
F + VYR DR DS GGGV IA++ I F +N+N
Sbjct: 833 FPPDYTVYRKDRL-----DSGGGGVFIAIKHDIPSFASPNHNNNKN 873
>SB_11923| Best HMM Match : Toxin_3 (HMM E-Value=0.32)
Length = 884
Score = 26.6 bits (56), Expect = 9.1
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +2
Query: 260 EDEIGFFEDISDTIITNPGDEFLCVGDFNIRNASWE 367
E E+ F ++ S++I+ + LC G + +A W+
Sbjct: 473 ETEVIFLDEASESILDIDDWKILCQGGYTAHDAKWK 508
>SB_8547| Best HMM Match : Amelogenin (HMM E-Value=8.1)
Length = 201
Score = 26.6 bits (56), Expect = 9.1
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -2
Query: 441 LERPKTSESHRSSFKSLAG-PSTPISSQEAFLILKSPTHKNSSP 313
+E+ K SHRSS+K+ G P S F ++ N SP
Sbjct: 1 MEKKKKDHSHRSSYKTFWGFPLREYESFPGFAAVEIGRKTNGSP 44
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,963,893
Number of Sequences: 59808
Number of extensions: 213300
Number of successful extensions: 609
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 859323430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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