Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0120
         (442 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    37   4e-04
M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles ...    31   0.024
AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcript...    30   0.042
AY705402-1|AAU12511.1|  509|Anopheles gambiae nicotinic acetylch...    23   6.4  
AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcript...    23   6.4  

>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 36.7 bits (81), Expect = 4e-04
 Identities = 18/30 (60%), Positives = 22/30 (73%)
 Frame = +3

Query: 15  LFDERFVVYRCDRNYNSRNDSLGGGVLIAV 104
           LF+  F VYRCDR+  S + S GGGVL+AV
Sbjct: 125 LFNNNFSVYRCDRSL-SGSSSRGGGVLLAV 153



 Score = 24.2 bits (50), Expect = 2.1
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 290 SDTIITNPGDEFLCVGDFNIRNASW 364
           S T+   P D    +GDFN  + SW
Sbjct: 210 SFTLRLKPSDLLFVIGDFNQPSISW 234


>M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 975

 Score = 30.7 bits (66), Expect = 0.024
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +3

Query: 15  LFDERFVVYRCDRNYNSRNDSLGGGVLIA 101
           L  + + +YRCDR+  +   S GGGVL+A
Sbjct: 53  LDSDSYNIYRCDRSRLNNERSRGGGVLLA 81


>AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1022

 Score = 29.9 bits (64), Expect = 0.042
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = +2

Query: 278 FEDISDTII--TNPGDEFLCVGDFNIRNASW-ELIGVDGPARLLNDD 409
           FE++ D I+   +   +F+  GDFN  ++SW   +G  G ++ L  D
Sbjct: 99  FEELLDNIVLTVSGSSKFVVAGDFNAWSSSWANTLGARGESQRLRGD 145


>AY705402-1|AAU12511.1|  509|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 7 protein.
          Length = 509

 Score = 22.6 bits (46), Expect = 6.4
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 347 IRNASWELIGVDG 385
           I N  WEL+GV G
Sbjct: 175 ITNGEWELLGVPG 187


>AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1009

 Score = 22.6 bits (46), Expect = 6.4
 Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +2

Query: 287 ISDTIITNPG-DEFLCVGDFNIRNASW 364
           + +T++   G  +F+  GDFN  +ASW
Sbjct: 101 LDNTVMAVTGIHKFVIGGDFNAWSASW 127


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 413,587
Number of Sequences: 2352
Number of extensions: 7299
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 36993357
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)