Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0120
(442 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U43770-1|AAB01804.1| 131|Homo sapiens Ig light chain variable r... 31 1.8
Y17771-1|CAC44145.1| 114|Homo sapiens immunoglobulin light chai... 29 5.4
AJ972270-1|CAI99754.1| 109|Homo sapiens immunoglobulin kappa li... 29 7.1
S82746-1|AAD14416.1| 105|Homo sapiens Ig V protein. 29 9.4
BC045534-1|AAH45534.1| 1028|Homo sapiens SWI/SNF-related, matrix... 29 9.4
BC017953-1|AAH17953.1| 318|Homo sapiens Unknown (protein for IM... 29 9.4
AY008271-1|AAG16639.1| 1026|Homo sapiens helicase SMARCAD1 protein. 29 9.4
AK027490-1|BAB55150.1| 702|Homo sapiens protein ( Homo sapiens ... 29 9.4
AJ388643-1|CAB51294.1| 110|Homo sapiens immunoglobulin kappa ch... 29 9.4
AB032948-1|BAA86436.1| 1048|Homo sapiens KIAA1122 protein protein. 29 9.4
>U43770-1|AAB01804.1| 131|Homo sapiens Ig light chain variable
region protein.
Length = 131
Score = 31.1 bits (67), Expect = 1.8
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 9 SELFDERFVVYRCDRNYNSRNDSLGGGVLIAVRR 110
S L E F Y C ++YN+ + + GGG + ++R
Sbjct: 98 SSLQPEDFATYYCQQSYNTLSLTFGGGTKVEIKR 131
>Y17771-1|CAC44145.1| 114|Homo sapiens immunoglobulin light chain
protein.
Length = 114
Score = 29.5 bits (63), Expect = 5.4
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 9 SELFDERFVVYRCDRNYNSRNDSLGGGVLIAVRRGI 116
S L E F VY C + SR + GGG + ++R +
Sbjct: 75 SRLEPEDFAVYYCQQYSTSRGLTFGGGTKVEIKRTV 110
>AJ972270-1|CAI99754.1| 109|Homo sapiens immunoglobulin kappa light
chain variable region protein.
Length = 109
Score = 29.1 bits (62), Expect = 7.1
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 9 SELFDERFVVYRCDRNYNSRNDSLGGGVLIAVRR 110
S L E F Y C ++Y++ + GGG + ++R
Sbjct: 76 SSLQPEDFATYYCQQSYSTPRLTFGGGTKVVIKR 109
>S82746-1|AAD14416.1| 105|Homo sapiens Ig V protein.
Length = 105
Score = 28.7 bits (61), Expect = 9.4
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 9 SELFDERFVVYRCDRNYNSRNDSLGGGVLIAVRR 110
S L E F Y C ++Y++ + GGG + ++R
Sbjct: 72 SSLQPEDFATYYCQQSYSTPRLTFGGGTKVEIKR 105
>BC045534-1|AAH45534.1| 1028|Homo sapiens SWI/SNF-related,
matrix-associated actin-dependent regulator of
chromatin, subf protein.
Length = 1028
Score = 28.7 bits (61), Expect = 9.4
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = -1
Query: 436 KTKDK*VPPIIIQESSRSINTDQLPRSIPYIEIADAQKFVTGISNNCVRNILKKT 272
KT+D VP E SI+ + R I YI+++ + V +S NC + +KT
Sbjct: 62 KTEDSSVPETPDNERKASISYFKNQRGIQYIDLSSDSEDV--VSPNCSNTVQEKT 114
>BC017953-1|AAH17953.1| 318|Homo sapiens Unknown (protein for
IMAGE:4592233) protein.
Length = 318
Score = 28.7 bits (61), Expect = 9.4
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = -1
Query: 436 KTKDK*VPPIIIQESSRSINTDQLPRSIPYIEIADAQKFVTGISNNCVRNILKKT 272
KT+D VP E SI+ + R I YI+++ + V +S NC + +KT
Sbjct: 62 KTEDSSVPETPDNERKASISYFKNQRGIQYIDLSSDSEDV--VSPNCSNTVQEKT 114
>AY008271-1|AAG16639.1| 1026|Homo sapiens helicase SMARCAD1 protein.
Length = 1026
Score = 28.7 bits (61), Expect = 9.4
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = -1
Query: 436 KTKDK*VPPIIIQESSRSINTDQLPRSIPYIEIADAQKFVTGISNNCVRNILKKT 272
KT+D VP E SI+ + R I YI+++ + V +S NC + +KT
Sbjct: 62 KTEDSSVPETPDNERKASISYFKNQRGIQYIDLSSDSEDV--VSPNCSNTVQEKT 114
>AK027490-1|BAB55150.1| 702|Homo sapiens protein ( Homo sapiens
cDNA FLJ14584 fis, clone NT2RM4001592. ).
Length = 702
Score = 28.7 bits (61), Expect = 9.4
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = -1
Query: 436 KTKDK*VPPIIIQESSRSINTDQLPRSIPYIEIADAQKFVTGISNNCVRNILKKT 272
KT+D VP E SI+ + R I YI+++ + V +S NC + +KT
Sbjct: 62 KTEDSSVPETPDNERKASISYFKNQRGIQYIDLSSDSEDV--VSPNCSNTVQEKT 114
>AJ388643-1|CAB51294.1| 110|Homo sapiens immunoglobulin kappa chain
variable region protein.
Length = 110
Score = 28.7 bits (61), Expect = 9.4
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 9 SELFDERFVVYRCDRNYNSRNDSLGGGVLIAVRR 110
S L E F Y C ++Y++ + GGG + ++R
Sbjct: 76 SSLQPEDFATYYCQQSYSTPRLTFGGGTKVEIKR 109
>AB032948-1|BAA86436.1| 1048|Homo sapiens KIAA1122 protein protein.
Length = 1048
Score = 28.7 bits (61), Expect = 9.4
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = -1
Query: 436 KTKDK*VPPIIIQESSRSINTDQLPRSIPYIEIADAQKFVTGISNNCVRNILKKT 272
KT+D VP E SI+ + R I YI+++ + V +S NC + +KT
Sbjct: 82 KTEDSSVPETPDNERKASISYFKNQRGIQYIDLSSDSEDV--VSPNCSNTVQEKT 134
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,102,240
Number of Sequences: 237096
Number of extensions: 973712
Number of successful extensions: 2121
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2121
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3602345922
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -