Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0120
         (442 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY180919-1|AAN87272.1|  884|Drosophila melanogaster ORF1 protein.      30   1.6  
AF456125-1|AAL57609.1|  832|Drosophila melanogaster reverse tran...    30   1.6  
AE013599-2066|AAM70973.1|  599|Drosophila melanogaster CG30468-P...    29   3.7  
AY051776-1|AAK93200.1| 1022|Drosophila melanogaster LD30146p pro...    28   6.5  
AF417921-1|AAL16644.1| 2669|Drosophila melanogaster nucleosome r...    28   6.5  
AE014296-62|AAS64922.1| 2159|Drosophila melanogaster CG32346-PC,...    28   6.5  
AE014296-61|AAN11431.1| 2669|Drosophila melanogaster CG32346-PA,...    28   6.5  
AE014296-60|AAF47361.2| 2649|Drosophila melanogaster CG32346-PB,...    28   6.5  

>AY180919-1|AAN87272.1|  884|Drosophila melanogaster ORF1 protein.
          Length = 884

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 302 ITNPGDEFLCVGDFNIRNASWELIGVDGPARLLND 406
           I+     FL  GDFN R+ +W+    +G  ++LN+
Sbjct: 149 ISQINGNFLICGDFNSRHRAWKCTRANGWGKILNE 183


>AF456125-1|AAL57609.1|  832|Drosophila melanogaster reverse
           transcriptase protein.
          Length = 832

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 302 ITNPGDEFLCVGDFNIRNASWELIGVDGPARLLND 406
           I+     FL  GDFN R+ +W+    +G  ++LN+
Sbjct: 97  ISQINGNFLICGDFNSRHRAWKCTRANGWGKILNE 131


>AE013599-2066|AAM70973.1|  599|Drosophila melanogaster CG30468-PA
           protein.
          Length = 599

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = -1

Query: 388 RSINTDQLPRSIPYIEIADAQKFVTGISNNCVRNILKKTNFIFKLEE 248
           R+++  + PR+IPYI+    ++   G     +   +KK N   ++ E
Sbjct: 187 RTLSDKEPPRTIPYIDSKTGEEKFKGYVGMLISQFVKKVNATMQIRE 233


>AY051776-1|AAK93200.1| 1022|Drosophila melanogaster LD30146p
           protein.
          Length = 1022

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -3

Query: 104 HSNKYPATQRIIS--RVIVPIATVNNKTLIKQ 15
           H  K  ATQ I S  RV +P+A + NK L+ Q
Sbjct: 559 HVTKNSATQSIASSSRVALPLAQIKNKLLLAQ 590


>AF417921-1|AAL16644.1| 2669|Drosophila melanogaster nucleosome
            remodeling factor largesubunit NURF301 protein.
          Length = 2669

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -3

Query: 104  HSNKYPATQRIIS--RVIVPIATVNNKTLIKQ 15
            H  K  ATQ I S  RV +P+A + NK L+ Q
Sbjct: 1676 HVTKNSATQSIASSSRVALPLAQIKNKLLLAQ 1707


>AE014296-62|AAS64922.1| 2159|Drosophila melanogaster CG32346-PC,
            isoform C protein.
          Length = 2159

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -3

Query: 104  HSNKYPATQRIIS--RVIVPIATVNNKTLIKQ 15
            H  K  ATQ I S  RV +P+A + NK L+ Q
Sbjct: 1676 HVTKNSATQSIASSSRVALPLAQIKNKLLLAQ 1707


>AE014296-61|AAN11431.1| 2669|Drosophila melanogaster CG32346-PA,
            isoform A protein.
          Length = 2669

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -3

Query: 104  HSNKYPATQRIIS--RVIVPIATVNNKTLIKQ 15
            H  K  ATQ I S  RV +P+A + NK L+ Q
Sbjct: 1676 HVTKNSATQSIASSSRVALPLAQIKNKLLLAQ 1707


>AE014296-60|AAF47361.2| 2649|Drosophila melanogaster CG32346-PB,
            isoform B protein.
          Length = 2649

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -3

Query: 104  HSNKYPATQRIIS--RVIVPIATVNNKTLIKQ 15
            H  K  ATQ I S  RV +P+A + NK L+ Q
Sbjct: 1676 HVTKNSATQSIASSSRVALPLAQIKNKLLLAQ 1707


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,436,914
Number of Sequences: 53049
Number of extensions: 304105
Number of successful extensions: 948
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1417837128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)